In my hands multiple ligand dockign does not work.
If I use the option you suggest:
--ligand_directory arg ligand directory, if virtual screening is needed
--output_directory arg output directory, if virtual screening is needed
The software generates _out directory and does not save anything.
If I wrote a code in python or batch to dock, it runs but does not save.
This is the batch code I use:
Hi,
In my hands multiple ligand dockign does not work. If I use the option you suggest: --ligand_directory arg ligand directory, if virtual screening is needed --output_directory arg output directory, if virtual screening is needed The software generates _out directory and does not save anything.
If I wrote a code in python or batch to dock, it runs but does not save. This is the batch code I use:
@echo off
for %%F in (*.pdbqt) do ( echo Processing file: %%F G:\MacrocycleScreening\Vina-GPU-2.0-main\Vina-GPU+\Vina-GPU+.exe ^ --ligand "%%F" --receptor G:\MacrocycleScreening\Molecule_For_Dock.pdbqt ^ --thread 8000 ^ --center_x -35 ^ --center_y 8 ^ --center_z 14 ^ --size_x 15 ^ --size_y 20 ^ --size_z 15 )
If I run a dock at the time it works, so clearly is a problem of how it saves. Can you resolve this?
Thanks