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Deltares-research / coastviewer

Coast viewer server side. Serves several sources as KML and geojson.
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Scheduled biweekly dependency update for week 03 #174

Closed pyup-bot closed 1 year ago

pyup-bot commented 1 year ago

Update certifi from 2019.11.28 to 2022.12.7.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/certifi - Repo: https://github.com/certifi/python-certifi

Update Click from 7.0 to 8.1.3.

Changelog ### 8.1.3 ``` ------------- Released 2022-04-28 - Use verbose form of ``typing.Callable`` for ``command`` and ``group``. :issue:`2255` - Show error when attempting to create an option with ``multiple=True, is_flag=True``. Use ``count`` instead. :issue:`2246` ``` ### 8.1.2 ``` ------------- Released 2022-03-31 - Fix error message for readable path check that was mixed up with the executable check. :pr:`2236` - Restore parameter order for ``Path``, placing the ``executable`` parameter at the end. It is recommended to use keyword arguments instead of positional arguments. :issue:`2235` ``` ### 8.1.1 ``` ------------- Released 2022-03-30 - Fix an issue with decorator typing that caused type checking to report that a command was not callable. :issue:`2227` ``` ### 8.1.0 ``` ------------- Released 2022-03-28 - Drop support for Python 3.6. :pr:`2129` - Remove previously deprecated code. :pr:`2130` - ``Group.resultcallback`` is renamed to ``result_callback``. - ``autocompletion`` parameter to ``Command`` is renamed to ``shell_complete``. - ``get_terminal_size`` is removed, use ``shutil.get_terminal_size`` instead. - ``get_os_args`` is removed, use ``sys.argv[1:]`` instead. - Rely on :pep:`538` and :pep:`540` to handle selecting UTF-8 encoding instead of ASCII. Click's locale encoding detection is removed. :issue:`2198` - Single options boolean flags with ``show_default=True`` only show the default if it is ``True``. :issue:`1971` - The ``command`` and ``group`` decorators can be applied with or without parentheses. :issue:`1359` - The ``Path`` type can check whether the target is executable. :issue:`1961` - ``Command.show_default`` overrides ``Context.show_default``, instead of the other way around. :issue:`1963` - Parameter decorators and ``group`` handles ``cls=None`` the same as not passing ``cls``. ``option`` handles ``help=None`` the same as not passing ``help``. :issue:`1959` - A flag option with ``required=True`` requires that the flag is passed instead of choosing the implicit default value. :issue:`1978` - Indentation in help text passed to ``Option`` and ``Command`` is cleaned the same as using the ``option`` and ``command`` decorators does. A command's ``epilog`` and ``short_help`` are also processed. :issue:`1985` - Store unprocessed ``Command.help``, ``epilog`` and ``short_help`` strings. Processing is only done when formatting help text for output. :issue:`2149` - Allow empty str input for ``prompt()`` when ``confirmation_prompt=True`` and ``default=""``. :issue:`2157` - Windows glob pattern expansion doesn't fail if a value is an invalid pattern. :issue:`2195` - It's possible to pass a list of ``params`` to ``command``. Any params defined with decorators are appended to the passed params. :issue:`2131`. - ``command`` decorator is annotated as returning the correct type if a ``cls`` argument is used. :issue:`2211` - A ``Group`` with ``invoke_without_command=True`` and ``chain=False`` will invoke its result callback with the group function's return value. :issue:`2124` - ``to_info_dict`` will not fail if a ``ParamType`` doesn't define a ``name``. :issue:`2168` - Shell completion prioritizes option values with option prefixes over new options. :issue:`2040` - Options that get an environment variable value using ``autoenvvar_prefix`` treat an empty value as ``None``, consistent with a direct ``envvar``. :issue:`2146` ``` ### 8.0.4 ``` ------------- Released 2022-02-18 - ``open_file`` recognizes ``Path("-")`` as a standard stream, the same as the string ``"-"``. :issue:`2106` - The ``option`` and ``argument`` decorators preserve the type annotation of the decorated function. :pr:`2155` - A callable default value can customize its help text by overriding ``__str__`` instead of always showing ``(dynamic)``. :issue:`2099` - Fix a typo in the Bash completion script that affected file and directory completion. If this script was generated by a previous version, it should be regenerated. :issue:`2163` - Fix typing for ``echo`` and ``secho`` file argument. :issue:`2174, 2185` ``` ### 8.0.3 ``` ------------- Released 2021-10-10 - Fix issue with ``Path(resolve_path=True)`` type creating invalid paths. :issue:`2088` - Importing ``readline`` does not cause the ``confirm()`` prompt to disappear when pressing backspace. :issue:`2092` - Any default values injected by ``invoke()`` are cast to the corresponding parameter's type. :issue:`2089, 2090` ``` ### 8.0.2 ``` ------------- Released 2021-10-08 - ``is_bool_flag`` is not set to ``True`` if ``is_flag`` is ``False``. :issue:`1925` - Bash version detection is locale independent. :issue:`1940` - Empty ``default`` value is not shown for ``multiple=True``. :issue:`1969` - Fix shell completion for arguments that start with a forward slash such as absolute file paths. :issue:`1929` - ``Path`` type with ``resolve_path=True`` resolves relative symlinks to be relative to the containing directory. :issue:`1921` - Completion does not skip Python's resource cleanup when exiting, avoiding some unexpected warning output. :issue:`1738, 2017` - Fix type annotation for ``type`` argument in ``prompt`` function. :issue:`2062` - Fix overline and italic styles, which were incorrectly added when adding underline. :pr:`2058` - An option with ``count=True`` will not show "[x>=0]" in help text. :issue:`2072` - Default values are not cast to the parameter type twice during processing. :issue:`2085` - Options with ``multiple`` and ``flag_value`` use the flag value instead of leaving an internal placeholder. :issue:`2001` ``` ### 8.0.1 ``` ------------- Released 2021-05-19 - Mark top-level names as exported so type checking understand imports in user projects. :issue:`1879` - Annotate ``Context.obj`` as ``Any`` so type checking allows all operations on the arbitrary object. :issue:`1885` - Fix some types that weren't available in Python 3.6.0. :issue:`1882` - Fix type checking for iterating over ``ProgressBar`` object. :issue:`1892` - The ``importlib_metadata`` backport package is installed on Python < 3.8. :issue:`1889` - Arguments with ``nargs=-1`` only use env var value if no command line values are given. :issue:`1903` - Flag options guess their type from ``flag_value`` if given, like regular options do from ``default``. :issue:`1886` - Added documentation that custom parameter types may be passed already valid values in addition to strings. :issue:`1898` - Resolving commands returns the name that was given, not ``command.name``, fixing an unintended change to help text and ``default_map`` lookups. When using patterns like ``AliasedGroup``, override ``resolve_command`` to change the name that is returned if needed. :issue:`1895` - If a default value is invalid, it does not prevent showing help text. :issue:`1889` - Pass ``windows_expand_args=False`` when calling the main command to disable pattern expansion on Windows. There is no way to escape patterns in CMD, so if the program needs to pass them on as-is then expansion must be disabled. :issue:`1901` ``` ### 8.0.0 ``` ------------- Released 2021-05-11 - Drop support for Python 2 and 3.5. - Colorama is always installed on Windows in order to provide style and color support. :pr:`1784` - Adds a repr to Command, showing the command name for friendlier debugging. :issue:`1267`, :pr:`1295` - Add support for distinguishing the source of a command line parameter. :issue:`1264`, :pr:`1329` - Add an optional parameter to ``ProgressBar.update`` to set the ``current_item``. :issue:`1226`, :pr:`1332` - ``version_option`` uses ``importlib.metadata`` (or the ``importlib_metadata`` backport) instead of ``pkg_resources``. The version is detected based on the package name, not the entry point name. The Python package name must match the installed package name, or be passed with ``package_name=``. :issue:`1582` - If validation fails for a prompt with ``hide_input=True``, the value is not shown in the error message. :issue:`1460` - An ``IntRange`` or ``FloatRange`` option shows the accepted range in its help text. :issue:`1525`, :pr:`1303` - ``IntRange`` and ``FloatRange`` bounds can be open (``<``) instead of closed (``<=``) by setting ``min_open`` and ``max_open``. Error messages have changed to reflect this. :issue:`1100` - An option defined with duplicate flag names (``"--foo/--foo"``) raises a ``ValueError``. :issue:`1465` - ``echo()`` will not fail when using pytest's ``capsys`` fixture on Windows. :issue:`1590` - Resolving commands returns the canonical command name instead of the matched name. This makes behavior such as help text and ``Context.invoked_subcommand`` consistent when using patterns like ``AliasedGroup``. :issue:`1422` - The ``BOOL`` type accepts the values "on" and "off". :issue:`1629` - A ``Group`` with ``invoke_without_command=True`` will always invoke its result callback. :issue:`1178` - ``nargs == -1`` and ``nargs > 1`` is parsed and validated for values from environment variables and defaults. :issue:`729` - Detect the program name when executing a module or package with ``python -m name``. :issue:`1603` - Include required parent arguments in help synopsis of subcommands. :issue:`1475` - Help for boolean flags with ``show_default=True`` shows the flag name instead of ``True`` or ``False``. :issue:`1538` - Non-string objects passed to ``style()`` and ``secho()`` will be converted to string. :pr:`1146` - ``edit(require_save=True)`` will detect saves for editors that exit very fast on filesystems with 1 second resolution. :pr:`1050` - New class attributes make it easier to use custom core objects throughout an entire application. :pr:`938` - ``Command.context_class`` controls the context created when running the command. - ``Context.invoke`` creates new contexts of the same type, so a custom type will persist to invoked subcommands. - ``Context.formatter_class`` controls the formatter used to generate help and usage. - ``Group.command_class`` changes the default type for subcommands with ``group.command()``. - ``Group.group_class`` changes the default type for subgroups with ``group.group()``. Setting it to ``type`` will create subgroups of the same type as the group itself. - Core objects use ``super()`` consistently for better support of subclassing. - Use ``Context.with_resource()`` to manage resources that would normally be used in a ``with`` statement, allowing them to be used across subcommands and callbacks, then cleaned up when the context ends. :pr:`1191` - The result object returned by the test runner's ``invoke()`` method has a ``return_value`` attribute with the value returned by the invoked command. :pr:`1312` - Required arguments with the ``Choice`` type show the choices in curly braces to indicate that one is required (``{a|b|c}``). :issue:`1272` - If only a name is passed to ``option()``, Click suggests renaming it to ``--name``. :pr:`1355` - A context's ``show_default`` parameter defaults to the value from the parent context. :issue:`1565` - ``click.style()`` can output 256 and RGB color codes. Most modern terminals support these codes. :pr:`1429` - When using ``CliRunner.invoke()``, the replaced ``stdin`` file has ``name`` and ``mode`` attributes. This lets ``File`` options with the ``-`` value match non-testing behavior. :issue:`1064` - When creating a ``Group``, allow passing a list of commands instead of a dict. :issue:`1339` - When a long option name isn't valid, use ``difflib`` to make better suggestions for possible corrections. :issue:`1446` - Core objects have a ``to_info_dict()`` method. This gathers information about the object's structure that could be useful for a tool generating user-facing documentation. To get the structure of an entire CLI, use ``Context(cli).to_info_dict()``. :issue:`461` - Redesign the shell completion system. :issue:`1484`, :pr:`1622` - Support Bash >= 4.4, Zsh, and Fish, with the ability for extensions to add support for other shells. - Allow commands, groups, parameters, and types to override their completions suggestions. - Groups complete the names commands were registered with, which can differ from the name they were created with. - The ``autocompletion`` parameter for options and arguments is renamed to ``shell_complete``. The function must take ``ctx, param, incomplete``, must do matching rather than return all values, and must return a list of strings or a list of ``CompletionItem``. The old name and behavior is deprecated and will be removed in 8.1. - The env var values used to start completion have changed order. The shell now comes first, such as ``{shell}_source`` rather than ``source_{shell}``, and is always required. - Completion correctly parses command line strings with incomplete quoting or escape sequences. :issue:`1708` - Extra context settings (``obj=...``, etc.) are passed on to the completion system. :issue:`942` - Include ``--help`` option in completion. :pr:`1504` - ``ParameterSource`` is an ``enum.Enum`` subclass. :issue:`1530` - Boolean and UUID types strip surrounding space before converting. :issue:`1605` - Adjusted error message from parameter type validation to be more consistent. Quotes are used to distinguish the invalid value. :issue:`1605` - The default value for a parameter with ``nargs`` > 1 and ``multiple=True`` must be a list of tuples. :issue:`1649` - When getting the value for a parameter, the default is tried in the same section as other sources to ensure consistent processing. :issue:`1649` - All parameter types accept a value that is already the correct type. :issue:`1649` - For shell completion, an argument is considered incomplete if its value did not come from the command line args. :issue:`1649` - Added ``ParameterSource.PROMPT`` to track parameter values that were prompted for. :issue:`1649` - Options with ``nargs`` > 1 no longer raise an error if a default is not given. Parameters with ``nargs`` > 1 default to ``None``, and parameters with ``multiple=True`` or ``nargs=-1`` default to an empty tuple. :issue:`472` - Handle empty env vars as though the option were not passed. This extends the change introduced in 7.1 to be consistent in more cases. :issue:`1285` - ``Parameter.get_default()`` checks ``Context.default_map`` to handle overrides consistently in help text, ``invoke()``, and prompts. :issue:`1548` - Add ``prompt_required`` param to ``Option``. When set to ``False``, the user will only be prompted for an input if no value was passed. :issue:`736` - Providing the value to an option can be made optional through ``is_flag=False``, and the value can instead be prompted for or passed in as a default value. :issue:`549, 736, 764, 921, 1015, 1618` - Fix formatting when ``Command.options_metavar`` is empty. :pr:`1551` - Revert adding space between option help text that wraps. :issue:`1831` - The default value passed to ``prompt`` will be cast to the correct type like an input value would be. :pr:`1517` - Automatically generated short help messages will stop at the first ending of a phrase or double linebreak. :issue:`1082` - Skip progress bar render steps for efficiency with very fast iterators by setting ``update_min_steps``. :issue:`676` - Respect ``case_sensitive=False`` when doing shell completion for ``Choice`` :issue:`1692` - Use ``mkstemp()`` instead of ``mktemp()`` in pager implementation. :issue:`1752` - If ``Option.show_default`` is a string, it is displayed even if ``default`` is ``None``. :issue:`1732` - ``click.get_terminal_size()`` is deprecated and will be removed in 8.1. Use :func:`shutil.get_terminal_size` instead. :issue:`1736` - Control the location of the temporary directory created by ``CLIRunner.isolated_filesystem`` by passing ``temp_dir``. A custom directory will not be removed automatically. :issue:`395` - ``click.confirm()`` will prompt until input is given if called with ``default=None``. :issue:`1381` - Option prompts validate the value with the option's callback in addition to its type. :issue:`457` - ``confirmation_prompt`` can be set to a custom string. :issue:`723` - Allow styled output in Jupyter on Windows. :issue:`1271` - ``style()`` supports the ``strikethrough``, ``italic``, and ``overline`` styles. :issue:`805, 1821` - Multiline marker is removed from short help text. :issue:`1597` - Restore progress bar behavior of echoing only the label if the file is not a TTY. :issue:`1138` - Progress bar output is shown even if execution time is less than 0.5 seconds. :issue:`1648` - Progress bar ``item_show_func`` shows the current item, not the previous item. :issue:`1353` - The ``Path`` param type can be passed ``path_type=pathlib.Path`` to return a path object instead of a string. :issue:`405` - ``TypeError`` is raised when parameter with ``multiple=True`` or ``nargs > 1`` has non-iterable default. :issue:`1749` - Add a ``pass_meta_key`` decorator for passing a key from ``Context.meta``. This is useful for extensions using ``meta`` to store information. :issue:`1739` - ``Path`` ``resolve_path`` resolves symlinks on Windows Python < 3.8. :issue:`1813` - Command deprecation notice appears at the start of the help text, as well as in the short help. The notice is not in all caps. :issue:`1791` - When taking arguments from ``sys.argv`` on Windows, glob patterns, user dir, and env vars are expanded. :issue:`1096` - Marked messages shown by the CLI with ``gettext()`` to allow applications to translate Click's built-in strings. :issue:`303` - Writing invalid characters to ``stderr`` when using the test runner does not raise a ``UnicodeEncodeError``. :issue:`848` - Fix an issue where ``readline`` would clear the entire ``prompt()`` line instead of only the input when pressing backspace. :issue:`665` - Add all kwargs passed to ``Context.invoke()`` to ``ctx.params``. Fixes an inconsistency when nesting ``Context.forward()`` calls. :issue:`1568` - The ``MultiCommand.resultcallback`` decorator is renamed to ``result_callback``. The old name is deprecated. :issue:`1160` - Fix issues with ``CliRunner`` output when using ``echo_stdin=True``. :issue:`1101` - Fix a bug of ``click.utils.make_default_short_help`` for which the returned string could be as long as ``max_width + 3``. :issue:`1849` - When defining a parameter, ``default`` is validated with ``multiple`` and ``nargs``. More validation is done for values being processed as well. :issue:`1806` - ``HelpFormatter.write_text`` uses the full line width when wrapping text. :issue:`1871` ``` ### 7.1.2 ``` ------------- Released 2020-04-27 - Revert applying shell quoting to commands for ``echo_with_pager`` and ``edit``. This was intended to allows spaces in commands, but caused issues if the string was actually a command and arguments, or on Windows. Instead, the string must be quoted manually as it should appear on the command line. :issue:`1514` ``` ### 7.1.1 ``` ------------- Released 2020-03-09 - Fix ``ClickException`` output going to stdout instead of stderr. :issue:`1495` ``` ### 7.1 ``` ----------- Released 2020-03-09 - Fix PyPI package name, "click" is lowercase again. - Fix link in ``unicode_literals`` error message. :pr:`1151` - Add support for colored output on UNIX Jupyter notebooks. :issue:`1185` - Operations that strip ANSI controls will strip the cursor hide/show sequences. :issue:`1216` - Remove unused compat shim for ``bytes``. :pr:`1195` - Expand testing around termui, especially getchar on Windows. :issue:`1116` - Fix output on Windows Python 2.7 built with MSVC 14. :pr:`1342` - Fix ``OSError`` when running in MSYS2. :issue:`1338` - Fix ``OSError`` when redirecting to ``NUL`` stream on Windows. :issue:`1065` - Fix memory leak when parsing Unicode arguments on Windows. :issue:`1136` - Fix error in new AppEngine environments. :issue:`1462` - Always return one of the passed choices for ``click.Choice`` :issue:`1277`, :pr:`1318` - Add ``no_args_is_help`` option to ``click.Command``, defaults to False :pr:`1167` - Add ``show_default`` parameter to ``Context`` to enable showing defaults globally. :issue:`1018` - Handle ``env MYPATH=''`` as though the option were not passed. :issue:`1196` - It is once again possible to call ``next(bar)`` on an active progress bar instance. :issue:`1125` - ``open_file`` with ``atomic=True`` retains permissions of existing files and respects the current umask for new files. :issue:`1376` - When using the test ``CliRunner`` with ``mix_stderr=False``, if ``result.stderr`` is empty it will not raise a ``ValueError``. :issue:`1193` - Remove the unused ``mix_stderr`` parameter from ``CliRunner.invoke``. :issue:`1435` - Fix ``TypeError`` raised when using bool flags and specifying ``type=bool``. :issue:`1287` - Newlines in option help text are replaced with spaces before re-wrapping to avoid uneven line breaks. :issue:`834` - ``MissingParameter`` exceptions are printable in the Python interpreter. :issue:`1139` - Fix how default values for file-type options are shown during prompts. :issue:`914` - Fix environment variable automatic generation for commands containing ``-``. :issue:`1253` - Option help text replaces newlines with spaces when rewrapping, but preserves paragraph breaks, fixing multiline formatting. :issue:`834, 1066, 1397` - Option help text that is wrapped adds an extra newline at the end to distinguish it from the next option. :issue:`1075` - Consider ``sensible-editor`` when determining the editor to use for ``click.edit()``. :pr:`1469` - Arguments to system calls such as the executable path passed to ``click.edit`` can contains spaces. :pr:`1470` - Add ZSH completion autoloading and error handling. :issue:`1348` - Add a repr to ``Command``, ``Group``, ``Option``, and ``Argument``, showing the name for friendlier debugging. :issue:`1267` - Completion doesn't consider option names if a value starts with ``-`` after the ``--`` separator. :issue:`1247` - ZSH completion escapes special characters in values. :pr:`1418` - Add completion support for Fish shell. :pr:`1423` - Decoding bytes option values falls back to UTF-8 in more cases. :pr:`1468` - Make the warning about old 2-arg parameter callbacks a deprecation warning, to be removed in 8.0. This has been a warning since Click 2.0. :pr:`1492` - Adjust error messages to standardize the types of quotes used so they match error messages from Python. ```
Links - PyPI: https://pypi.org/project/click - Changelog: https://pyup.io/changelogs/click/ - Homepage: https://palletsprojects.com/p/click/

Update numpy from 1.17.1 to 1.24.1.

Changelog ### 1.24.1 ``` discovered after the 1.24.0 release. The Python versions supported by this release are 3.8-3.11. Contributors A total of 12 people contributed to this release. People with a \"+\" by their names contributed a patch for the first time. - Andrew Nelson - Ben Greiner + - Charles Harris - Clément Robert - Matteo Raso - Matti Picus - Melissa Weber Mendonça - Miles Cranmer - Ralf Gommers - Rohit Goswami - Sayed Adel - Sebastian Berg Pull requests merged A total of 18 pull requests were merged for this release. - [22820](https://github.com/numpy/numpy/pull/22820): BLD: add workaround in setup.py for newer setuptools - [22830](https://github.com/numpy/numpy/pull/22830): BLD: CIRRUS_TAG redux - [22831](https://github.com/numpy/numpy/pull/22831): DOC: fix a couple typos in 1.23 notes - [22832](https://github.com/numpy/numpy/pull/22832): BUG: Fix refcounting errors found using pytest-leaks - [22834](https://github.com/numpy/numpy/pull/22834): BUG, SIMD: Fix invalid value encountered in several ufuncs - [22837](https://github.com/numpy/numpy/pull/22837): TST: ignore more np.distutils.log imports - [22839](https://github.com/numpy/numpy/pull/22839): BUG: Do not use getdata() in np.ma.masked_invalid - [22847](https://github.com/numpy/numpy/pull/22847): BUG: Ensure correct behavior for rows ending in delimiter in\... - [22848](https://github.com/numpy/numpy/pull/22848): BUG, SIMD: Fix the bitmask of the boolean comparison - [22857](https://github.com/numpy/numpy/pull/22857): BLD: Help raspian arm + clang 13 about \_\_builtin_mul_overflow - [22858](https://github.com/numpy/numpy/pull/22858): API: Ensure a full mask is returned for masked_invalid - [22866](https://github.com/numpy/numpy/pull/22866): BUG: Polynomials now copy properly (#22669) - [22867](https://github.com/numpy/numpy/pull/22867): BUG, SIMD: Fix memory overlap in ufunc comparison loops - [22868](https://github.com/numpy/numpy/pull/22868): BUG: Fortify string casts against floating point warnings - [22875](https://github.com/numpy/numpy/pull/22875): TST: Ignore nan-warnings in randomized out tests - [22883](https://github.com/numpy/numpy/pull/22883): MAINT: restore npymath implementations needed for freebsd - [22884](https://github.com/numpy/numpy/pull/22884): BUG: Fix integer overflow in in1d for mixed integer dtypes #22877 - [22887](https://github.com/numpy/numpy/pull/22887): BUG: Use whole file for encoding checks with `charset_normalizer`. 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ef85cf1f693c88c1fd229ccd1055570cb41cdf4875873b7728b6301f12cd05bf numpy-1.24.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 87a118968fba001b248aac90e502c0b13606721b1343cdaddbc6e552e8dfb56f numpy-1.24.1-cp39-cp39-win32.whl ddc7ab52b322eb1e40521eb422c4e0a20716c271a306860979d450decbb51b8e numpy-1.24.1-cp39-cp39-win_amd64.whl ed5fb71d79e771ec930566fae9c02626b939e37271ec285e9efaf1b5d4370e7d numpy-1.24.1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl ad2925567f43643f51255220424c23d204024ed428afc5aad0f86f3ffc080086 numpy-1.24.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl cfa1161c6ac8f92dea03d625c2d0c05e084668f4a06568b77a25a89111621566 numpy-1.24.1-pp38-pypy38_pp73-win_amd64.whl 2386da9a471cc00a1f47845e27d916d5ec5346ae9696e01a8a34760858fe9dd2 numpy-1.24.1.tar.gz ``` ### 1.24 ``` The NumPy 1.24.0 release continues the ongoing work to improve the handling and promotion of dtypes, increase the execution speed, and clarify the documentation. There are also a large number of new and expired deprecations due to changes in promotion and cleanups. This might be called a deprecation release. Highlights are - Many new deprecations, check them out. - Many expired deprecations, - New F2PY features and fixes. - New \"dtype\" and \"casting\" keywords for stacking functions. See below for the details, Deprecations Deprecate fastCopyAndTranspose and PyArray_CopyAndTranspose The `numpy.fastCopyAndTranspose` function has been deprecated. Use the corresponding copy and transpose methods directly: arr.T.copy() The underlying C function `PyArray_CopyAndTranspose` has also been deprecated from the NumPy C-API. ([gh-22313](https://github.com/numpy/numpy/pull/22313)) Conversion of out-of-bound Python integers Attempting a conversion from a Python integer to a NumPy value will now always check whether the result can be represented by NumPy. This means the following examples will fail in the future and give a `DeprecationWarning` now: np.uint8(-1) np.array([3000], dtype=np.int8) Many of these did succeed before. Such code was mainly useful for unsigned integers with negative values such as `np.uint8(-1)` giving `np.iinfo(np.uint8).max`. Note that conversion between NumPy integers is unaffected, so that `np.array(-1).astype(np.uint8)` continues to work and use C integer overflow logic. ([gh-22393](https://github.com/numpy/numpy/pull/22393)) Deprecate `msort` The `numpy.msort` function is deprecated. Use `np.sort(a, axis=0)` instead. ([gh-22456](https://github.com/numpy/numpy/pull/22456)) `np.str0` and similar are now deprecated The scalar type aliases ending in a 0 bit size: `np.object0`, `np.str0`, `np.bytes0`, `np.void0`, `np.int0`, `np.uint0` as well as `np.bool8` are now deprecated and will eventually be removed. ([gh-22607](https://github.com/numpy/numpy/pull/22607)) Expired deprecations - The `normed` keyword argument has been removed from [np.histogram]{.title-ref}, [np.histogram2d]{.title-ref}, and [np.histogramdd]{.title-ref}. Use `density` instead. If `normed` was passed by position, `density` is now used. ([gh-21645](https://github.com/numpy/numpy/pull/21645)) - Ragged array creation will now always raise a `ValueError` unless `dtype=object` is passed. This includes very deeply nested sequences. ([gh-22004](https://github.com/numpy/numpy/pull/22004)) - Support for Visual Studio 2015 and earlier has been removed. - Support for the Windows Interix POSIX interop layer has been removed. ([gh-22139](https://github.com/numpy/numpy/pull/22139)) - Support for cygwin \< 3.3 has been removed. ([gh-22159](https://github.com/numpy/numpy/pull/22159)) - The mini() method of `np.ma.MaskedArray` has been removed. Use either `np.ma.MaskedArray.min()` or `np.ma.minimum.reduce()`. - The single-argument form of `np.ma.minimum` and `np.ma.maximum` has been removed. Use `np.ma.minimum.reduce()` or `np.ma.maximum.reduce()` instead. ([gh-22228](https://github.com/numpy/numpy/pull/22228)) - Passing dtype instances other than the canonical (mainly native byte-order) ones to `dtype=` or `signature=` in ufuncs will now raise a `TypeError`. We recommend passing the strings `"int8"` or scalar types `np.int8` since the byte-order, datetime/timedelta unit, etc. are never enforced. (Initially deprecated in NumPy 1.21.) ([gh-22540](https://github.com/numpy/numpy/pull/22540)) - The `dtype=` argument to comparison ufuncs is now applied correctly. That means that only `bool` and `object` are valid values and `dtype=object` is enforced. ([gh-22541](https://github.com/numpy/numpy/pull/22541)) - The deprecation for the aliases `np.object`, `np.bool`, `np.float`, `np.complex`, `np.str`, and `np.int` is expired (introduces NumPy 1.20). Some of these will now give a FutureWarning in addition to raising an error since they will be mapped to the NumPy scalars in the future. ([gh-22607](https://github.com/numpy/numpy/pull/22607)) Compatibility notes `array.fill(scalar)` may behave slightly different `numpy.ndarray.fill` may in some cases behave slightly different now due to the fact that the logic is aligned with item assignment: arr = np.array([1]) with any dtype/value arr.fill(scalar) is now identical to: arr[0] = scalar Previously casting may have produced slightly different answers when using values that could not be represented in the target `dtype` or when the target had `object` dtype. ([gh-20924](https://github.com/numpy/numpy/pull/20924)) Subarray to object cast now copies Casting a dtype that includes a subarray to an object will now ensure a copy of the subarray. Previously an unsafe view was returned: arr = np.ones(3, dtype=[("f", "i", 3)]) subarray_fields = arr.astype(object)[0] subarray = subarray_fields[0] "f" field np.may_share_memory(subarray, arr) Is now always false. While previously it was true for the specific cast. ([gh-21925](https://github.com/numpy/numpy/pull/21925)) Returned arrays respect uniqueness of dtype kwarg objects When the `dtype` keyword argument is used with :py`np.array()`{.interpreted-text role="func"} or :py`asarray()`{.interpreted-text role="func"}, the dtype of the returned array now always exactly matches the dtype provided by the caller. In some cases this change means that a *view* rather than the input array is returned. The following is an example for this on 64bit Linux where `long` and `longlong` are the same precision but different `dtypes`: >>> arr = np.array([1, 2, 3], dtype="long") >>> new_dtype = np.dtype("longlong") >>> new = np.asarray(arr, dtype=new_dtype) >>> new.dtype is new_dtype True >>> new is arr False Before the change, the `dtype` did not match because `new is arr` was `True`. ([gh-21995](https://github.com/numpy/numpy/pull/21995)) DLPack export raises `BufferError` When an array buffer cannot be exported via DLPack a `BufferError` is now always raised where previously `TypeError` or `RuntimeError` was raised. This allows falling back to the buffer protocol or `__array_interface__` when DLPack was tried first. ([gh-22542](https://github.com/numpy/numpy/pull/22542)) NumPy builds are no longer tested on GCC-6 Ubuntu 18.04 is deprecated for GitHub actions and GCC-6 is not available on Ubuntu 20.04, so builds using that compiler are no longer tested. We still test builds using GCC-7 and GCC-8. ([gh-22598](https://github.com/numpy/numpy/pull/22598)) New Features New attribute `symbol` added to polynomial classes The polynomial classes in the `numpy.polynomial` package have a new `symbol` attribute which is used to represent the indeterminate of the polynomial. This can be used to change the value of the variable when printing: >>> P_y = np.polynomial.Polynomial([1, 0, -1], symbol="y") >>> print(P_y) 1.0 + 0.0·y¹ - 1.0·y² Note that the polynomial classes only support 1D polynomials, so operations that involve polynomials with different symbols are disallowed when the result would be multivariate: >>> P = np.polynomial.Polynomial([1, -1]) default symbol is "x" >>> P_z = np.polynomial.Polynomial([1, 1], symbol="z") >>> P * P_z Traceback (most recent call last) ... ValueError: Polynomial symbols differ The symbol can be any valid Python identifier. The default is `symbol=x`, consistent with existing behavior. ([gh-16154](https://github.com/numpy/numpy/pull/16154)) F2PY support for Fortran `character` strings F2PY now supports wrapping Fortran functions with: - character (e.g. `character x`) - character array (e.g. `character, dimension(n) :: x`) - character string (e.g. `character(len=10) x`) - and character string array (e.g. `character(len=10), dimension(n, m) :: x`) arguments, including passing Python unicode strings as Fortran character string arguments. ([gh-19388](https://github.com/numpy/numpy/pull/19388)) New function `np.show_runtime` A new function `numpy.show_runtime` has been added to display the runtime information of the machine in addition to `numpy.show_config` which displays the build-related information. ([gh-21468](https://github.com/numpy/numpy/pull/21468)) `strict` option for `testing.assert_array_equal` The `strict` option is now available for `testing.assert_array_equal`. Setting `strict=True` will disable the broadcasting behaviour for scalars and ensure that input arrays have the same data type. ([gh-21595](https://github.com/numpy/numpy/pull/21595)) New parameter `equal_nan` added to `np.unique` `np.unique` was changed in 1.21 to treat all `NaN` values as equal and return a single `NaN`. Setting `equal_nan=False` will restore pre-1.21 behavior to treat `NaNs` as unique. Defaults to `True`. ([gh-21623](https://github.com/numpy/numpy/pull/21623)) `casting` and `dtype` keyword arguments for `numpy.stack` The `casting` and `dtype` keyword arguments are now available for `numpy.stack`. To use them, write `np.stack(..., dtype=None, casting='same_kind')`. `casting` and `dtype` keyword arguments for `numpy.vstack` The `casting` and `dtype` keyword arguments are now available for `numpy.vstack`. To use them, write `np.vstack(..., dtype=None, casting='same_kind')`. `casting` and `dtype` keyword arguments for `numpy.hstack` The `casting` and `dtype` keyword arguments are now available for `numpy.hstack`. To use them, write `np.hstack(..., dtype=None, casting='same_kind')`. ([gh-21627](https://github.com/numpy/numpy/pull/21627)) The bit generator underlying the singleton RandomState can be changed The singleton `RandomState` instance exposed in the `numpy.random` module is initialized at startup with the `MT19937` bit generator. The new function `set_bit_generator` allows the default bit generator to be replaced with a user-provided bit generator. This function has been introduced to provide a method allowing seamless integration of a high-quality, modern bit generator in new code with existing code that makes use of the singleton-provided random variate generating functions. The companion function `get_bit_generator` returns the current bit generator being used by the singleton `RandomState`. This is provided to simplify restoring the original source of randomness if required. The preferred method to generate reproducible random numbers is to use a modern bit generator in an instance of `Generator`. The function `default_rng` simplifies instantiation: >>> rg = np.random.default_rng(3728973198) >>> rg.random() The same bit generator can then be shared with the singleton instance so that calling functions in the `random` module will use the same bit generator: >>> orig_bit_gen = np.random.get_bit_generator() >>> np.random.set_bit_generator(rg.bit_generator) >>> np.random.normal() The swap is permanent (until reversed) and so any call to functions in the `random` module will use the new bit generator. The original can be restored if required for code to run correctly: >>> np.random.set_bit_generator(orig_bit_gen) ([gh-21976](https://github.com/numpy/numpy/pull/21976)) `np.void` now has a `dtype` argument NumPy now allows constructing structured void scalars directly by passing the `dtype` argument to `np.void`. ([gh-22316](https://github.com/numpy/numpy/pull/22316)) Improvements F2PY Improvements - The generated extension modules don\'t use the deprecated NumPy-C API anymore - Improved `f2py` generated exception messages - Numerous bug and `flake8` warning fixes - various CPP macros that one can use within C-expressions of signature files are prefixed with `f2py_`. For example, one should use `f2py_len(x)` instead of `len(x)` - A new construct `character(f2py_len=...)` is introduced to support returning assumed length character strings (e.g. `character(len=*)`) from wrapper functions A hook to support rewriting `f2py` internal data structures after reading all its input files is introduced. This is required, for instance, for BC of SciPy support where character arguments are treated as character strings arguments in `C` expressions. ([gh-19388](https://github.com/numpy/numpy/pull/19388)) IBM zSystems Vector Extension Facility (SIMD) Added support for SIMD extensions of zSystem (z13, z14, z15), through the universal intrinsics interface. This support leads to performance improvements for all SIMD kernels implemented using the universal intrinsics, including the following operations: rint, floor, trunc, ceil, sqrt, absolute, square, reciprocal, tanh, sin, cos, equal, not_equal, greater, greater_equal, less, less_equal, maximum, minimum, fmax, fmin, argmax, argmin, add, subtract, multiply, divide. ([gh-20913](https://github.com/numpy/numpy/pull/20913)) NumPy now gives floating point errors in casts In most cases, NumPy previously did not give floating point warnings or errors when these happened during casts. For examples, casts like: np.array([2e300]).astype(np.float32) overflow for float32 np.array([np.inf]).astype(np.int64) Should now generally give floating point warnings. These warnings should warn that floating point overflow occurred. For errors when converting floating point values to integers users should expect invalid value warnings. Users can modify the behavior of these warnings using `np.errstate`. Note that for float to int casts, the exact warnings that are given may be platform dependent. For example: arr = np.full(100, value=1000, dtype=np.float64) arr.astype(np.int8) May give a result equivalent to (the intermediate cast means no warning is given): arr.astype(np.int64).astype(np.int8) May return an undefined result, with a warning set: RuntimeWarning: invalid value encountered in cast The precise behavior is subject to the C99 standard and its implementation in both software and hardware. ([gh-21437](https://github.com/numpy/numpy/pull/21437)) F2PY supports the value attribute The Fortran standard requires that variables declared with the `value` attribute must be passed by value instead of reference. F2PY now supports this use pattern correctly. So `integer, intent(in), value :: x` in Fortran codes will have correct wrappers generated. ([gh-21807](https://github.com/numpy/numpy/pull/21807)) Added pickle support for third-party BitGenerators The pickle format for bit generators was extended to allow each bit generator to supply its own constructor when during pickling. Previous versions of NumPy only supported unpickling `Generator` instances created with one of the core set of bit generators supplied with NumPy. Attempting to unpickle a `Generator` that used a third-party bit generators would fail since the constructor used during the unpickling was only aware of the bit generators included in NumPy. ([gh-22014](https://github.com/numpy/numpy/pull/22014)) arange() now explicitly fails with dtype=str Previously, the `np.arange(n, dtype=str)` function worked for `n=1` and `n=2`, but would raise a non-specific exception message for other values of `n`. Now, it raises a [TypeError]{.title-ref} informing that `arange` does not support string dtypes: >>> np.arange(2, dtype=str) Traceback (most recent call last) ... TypeError: arange() not supported for inputs with DType <class 'numpy.dtype[str_]'>. ([gh-22055](https://github.com/numpy/numpy/pull/22055)) `numpy.typing` protocols are now runtime checkable The protocols used in `numpy.typing.ArrayLike` and `numpy.typing.DTypeLike` are now properly marked as runtime checkable, making them easier to use for runtime type checkers. ([gh-22357](https://github.com/numpy/numpy/pull/22357)) Performance improvements and changes Faster version of `np.isin` and `np.in1d` for integer arrays `np.in1d` (used by `np.isin`) can now switch to a faster algorithm (up to \>10x faster) when it is passed two integer arrays. This is often automatically used, but you can use `kind="sort"` or `kind="table"` to force the old or new method, respectively. ([gh-12065](https://github.com/numpy/numpy/pull/12065)) Faster comparison operators The comparison functions (`numpy.equal`, `numpy.not_equal`, `numpy.less`, `numpy.less_equal`, `numpy.greater` and `numpy.greater_equal`) are now much faster as they are now vectorized with universal intrinsics. For a CPU with SIMD extension AVX512BW, the performance gain is up to 2.57x, 1.65x and 19.15x for integer, float and boolean data types, respectively (with N=50000). ([gh-21483](https://github.com/numpy/numpy/pull/21483)) Changes Better reporting of integer division overflow Integer division overflow of scalars and arrays used to provide a `RuntimeWarning` and the return value was undefined leading to crashes at rare occasions: >>> np.array([np.iinfo(np.int32).min]*10, dtype=np.int32) // np.int32(-1) <stdin>:1: RuntimeWarning: divide by zero encountered in floor_divide array([0, 0, 0, 0, 0, 0, 0, 0, 0, 0], dtype=int32) Integer division overflow now returns the input dtype\'s minimum value and raise the following `RuntimeWarning`: >>> np.array([np.iinfo(np.int32).min]*10, dtype=np.int32) // np.int32(-1) <stdin>:1: RuntimeWarning: overflow encountered in floor_divide array([-2147483648, -2147483648, -2147483648, -2147483648, -2147483648, -2147483648, -2147483648, -2147483648, -2147483648, -2147483648], dtype=int32) ([gh-21506](https://github.com/numpy/numpy/pull/21506)) `masked_invalid` now modifies the mask in-place When used with `copy=False`, `numpy.ma.masked_invalid` now modifies the input masked array in-place. This makes it behave identically to `masked_where` and better matches the documentation. ([gh-22046](https://github.com/numpy/numpy/pull/22046)) `nditer`/`NpyIter` allows all allocating all operands The NumPy iterator available through `np.nditer` in Python and as `NpyIter` in C now supports allocating all arrays. The iterator shape defaults to `()` in this case. The operands dtype must be provided, since a \"common dtype\" cannot be inferred from the other inputs. 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numpy-1.24.0rc1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 15605b92bf10b10e110a9c0f1c4ef6cd58246532c62a0c3d3188c05e69cdcdb6 numpy-1.24.0rc1-cp39-cp39-win32.whl 8046f5c23769791be8432a592b9881984e0e4abc7f552c7e5c349420a27323e7 numpy-1.24.0rc1-cp39-cp39-win_amd64.whl aa9c4a2f65d669e6559123154da944ad6bd7605cbba5cce81bf6794617870510 numpy-1.24.0rc1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl e44fd1bdfa50979ddec76318e21abc82ee3858e5f45dfc5153b6f660d9d29851 numpy-1.24.0rc1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 1802199d70d9f8ac11eb63a1ef50d33915b78a84bacacaadb2896175005103d4 numpy-1.24.0rc1-pp38-pypy38_pp73-win_amd64.whl d601180710004799acb8f80e564b84e71490fac9d84e115e2f5b0f6709754f16 numpy-1.24.0rc1.tar.gz ``` ### 1.23.5 ``` the 1.23.4 release and keeps the build infrastructure current. The Python versions supported for this release are 3.8-3.11. Contributors A total of 7 people contributed to this release. People with a \"+\" by their names contributed a patch for the first time. - \DWesl - Aayush Agrawal + - Adam Knapp + - Charles Harris - Navpreet Singh + - Sebastian Berg - Tania Allard Pull requests merged A total of 10 pull requests were merged for this release. - [22489](https://github.com/numpy/numpy/pull/22489): TST, MAINT: Replace most setup with setup_method (also teardown) - [22490](https://github.com/numpy/numpy/pull/22490): MAINT, CI: Switch to cygwin/cygwin-install-actionv2 - [22494](https://github.com/numpy/numpy/pull/22494): TST: Make test_partial_iteration_cleanup robust but require leak\... - [22592](https://github.com/numpy/numpy/pull/22592): MAINT: Ensure graceful handling of large header sizes - [22593](https://github.com/numpy/numpy/pull/22593): TYP: Spelling alignment for array flag literal - [22594](https://github.com/numpy/numpy/pull/22594): BUG: Fix bounds checking for `random.logseries` - [22595](https://github.com/numpy/numpy/pull/22595): DEV: Update GH actions and Dockerfile for Gitpod - [22596](https://github.com/numpy/numpy/pull/22596): CI: Only fetch in actions/checkout - [22597](https://github.com/numpy/numpy/pull/22597): BUG: Decrement ref count in gentype_reduce if allocated memory\... - [22625](https://github.com/numpy/numpy/pull/22625): BUG: Histogramdd breaks on big arrays in Windows Checksums MD5 8a412b79d975199cefadb465279fd569 numpy-1.23.5-cp310-cp310-macosx_10_9_x86_64.whl 1b56e8e6a0516c78473657abf0710538 numpy-1.23.5-cp310-cp310-macosx_11_0_arm64.whl c787f4763c9a5876e86a17f1651ba458 numpy-1.23.5-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl db07645022e56747ba3f00c2d742232e numpy-1.23.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl c63a6fb7cc16a13aabc82ec57ac6bb4d numpy-1.23.5-cp310-cp310-win32.whl 3fea9247e1d812600015641941fa273f numpy-1.23.5-cp310-cp310-win_amd64.whl 4222cfb36e5ac9aec348c81b075e2c05 numpy-1.23.5-cp311-cp311-macosx_10_9_x86_64.whl 6c7102f185b310ac70a62c13d46f04e6 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pyup-bot commented 1 year ago

Closing this in favor of #175