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DendrouLab
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panpipes
Multi-modal single cell analysis pipelines
BSD 3-Clause "New" or "Revised" License
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Fix #307
#312
SarahOuologuem
opened
1 month ago
0
Add lowmem parameter to MOFA
#311
wlason
opened
1 month ago
2
mouse cc genes option should be added to documentation
#310
JarneBelien
opened
1 month ago
1
Running MOFA on GPU -CUPY and SciPy bug
#309
wlason
closed
1 month ago
0
MOFA: >1TB RAM needed for ATAC
#308
wlason
opened
1 month ago
0
No control over number of PCs in batch_correct_none
#307
wlason
opened
1 month ago
1
MultiVI issue with PyTorch
#306
wlason
opened
1 month ago
2
Update pipeline.yml
#305
bio-la
closed
1 month ago
0
MultiVI epsilon parameter incorrectly parsed from yaml
#304
wlason
closed
1 month ago
0
Update run_scib.py
#303
JarneBelien
closed
1 month ago
0
Update multimodal integration documentation
#302
wlason
closed
2 months ago
0
LSI-enabled BBKNN
#301
wlason
closed
1 month ago
2
Combat integration removed from panpipes
#300
wlason
opened
2 months ago
0
GPU-enabled multiVI integration yaml issue
#299
wlason
opened
2 months ago
0
Update run_filter.py
#298
deevdevil88
closed
1 month ago
0
Error in ingestion of protein metadata table where first column = protein names
#297
JP-KIR
opened
2 months ago
0
BBKNN doesn't accept LSI as input
#296
wlason
closed
1 month ago
0
Integration workflow MultiVI and ATAC yaml fix
#295
wlason
opened
2 months ago
0
Consistency in ATAC dimensionality reduction between preprocess and integration yamls
#294
wlason
opened
2 months ago
0
MultiVI: no integration_col_categorical argument
#293
wlason
opened
2 months ago
0
Native system python being called over conda env python
#292
olivermccallion
closed
2 months ago
6
Fc update multivi
#291
bio-la
closed
3 months ago
0
Multi-sample multiome data
#290
bio-la
opened
3 months ago
0
MultiVI fixes and installation
#289
bio-la
opened
3 months ago
0
Threads documentation
#288
giuliaelgarcia
opened
3 months ago
1
update matplotlib and change imports
#287
bio-la
closed
3 months ago
1
Gene name has to be index of adata.var in input adata - add to documentation?
#286
JarneBelien
closed
3 months ago
1
Fc matplotlib
#285
bio-la
closed
3 months ago
1
minor hashing_ab bug fix
#284
deevdevil88
closed
3 months ago
0
scatterplot issues from scanpy
#283
bio-la
closed
3 months ago
1
Fc matplotlib
#282
bio-la
closed
3 months ago
0
matplotlib update breaks import get_cmap
#281
bio-la
closed
3 months ago
0
Panpipes ingest errros in writing out a concatenated MuData object when hashing abs are present in the prot modailty
#280
deevdevil88
opened
4 months ago
2
Fixed threads number in pipeline_integration.py
#279
giuliaelgarcia
closed
3 months ago
0
scib requires 1 or 2 threads only
#278
giuliaelgarcia
closed
3 months ago
0
Update run_scanpyQC_rna.py to fix scrublet merge issue in ingest
#277
deevdevil88
closed
4 months ago
0
Issue in ingest when merging scrublet results with main concatenated mudata object
#276
giuliaelgarcia
closed
4 months ago
1
Extended installation instructions for macOS
#275
Lilly-May
closed
5 months ago
0
Update install.md
#274
bio-la
closed
5 months ago
0
Include scib metrics computation in integration workflow
#273
Lilly-May
closed
5 months ago
0
added examples clustering yaml
#272
giuliaelgarcia
closed
5 months ago
0
markers column order in clustering
#271
bio-la
closed
3 months ago
0
cl action
#270
bio-la
closed
5 months ago
0
Changed name in pipeline_refmap_yml.md
#269
giuliaelgarcia
closed
5 months ago
0
Update index.rst
#268
giuliaelgarcia
closed
5 months ago
0
Fc scverse
#267
bio-la
closed
5 months ago
0
added instructions for no correction
#266
giuliaelgarcia
closed
5 months ago
0
scvi integration not plotting in interactive session on HPC
#265
JarneBelien
closed
3 months ago
4
Documentation: does not mention how only run no correction for rna and prot in integration
#264
giuliaelgarcia
closed
5 months ago
1
test refmap
#263
bio-la
closed
5 months ago
0
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