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DeniRibicic / q2ONT

Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2
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Pipeline configuration issue? #3

Closed sekhwal closed 4 years ago

sekhwal commented 4 years ago

Hi, I am trying to configure pipeline. However, it is showing following error?

-- $ conda env create -n qiime2-2019.7 --file qiime2-2019.7-py36-linux-conda.yml

NotWritableError: The current user does not have write permissions to a required path. path: /anaconda3/envs/.conda_envs_dir_test uid: 1024 gid: 1023

If you feel that permissions on this path are set incorrectly, you can manually change them by executing

$ sudo chown 1024:1023 /anaconda3/envs/.conda_envs_dir_test

In general, it's not advisable to use 'sudo conda'.

DeniRibicic commented 4 years ago

@sekhwal This is not per se a pipeline error, rather a conda environment installation error. It seems that you are trying to install the environment in the path where you have no writing permissions. I would advise you to go directly to q2 installation page and try again/troubleshoot there.

https://docs.qiime2.org/2019.10/install/native/#install-miniconda

EDIT: or try to build conda qiime2 environment somewhere in path where you have permissions to write

DeniRibicic commented 4 years ago

Since no activity in this thread, I will assume you have solved the problem and will mark this issue as closed