For some software, can they run with more thread?

DerKevinRiehl / TransposonUltimate

TransposonUltimate - a holistic set of tools for transposon identification

GNU General Public License v3.0

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For some software, can they run with more thread? #11

Closed Djangodu closed 1 year ago

Djangodu commented 1 year ago

Dear Kevin

For example, when I ran my 3.0GB genome sequence with must and mitetracker, using only 10 and 4 threads respectively, it took 50 hours, but no work was done.

While the classical work will start, after they run with must and mitetracker, the research work will take more and more time with just 4 threads, which is shown in the command line while running.

So, can you come up with some sort of solution to this?

Looking forward to your reply Sincerely yours

DerKevinRiehl commented 1 year ago

Der Djangodu, I was just wrapping these tools mitetracker and must in a pipeline so people can easily use it without having the pain to install them by themselves (as there was few to none manuals), but I didnt develop these tools and I am not their author.

If some tools take long, you might consider not using all of them. Best, Kevin

Djangodu commented 1 year ago

Dear Kevin

Thank you very much for your patient responses to my questions, these suggestions are very important to me.

Best wish Sincerely yours