parsing annotations because of mustv2 refineBoundary error

DerKevinRiehl / TransposonUltimate

TransposonUltimate - a holistic set of tools for transposon identification

GNU General Public License v3.0

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parsing annotations because of mustv2 refineBoundary error #15

Open vkeggers opened 1 month ago

vkeggers commented 1 month ago

Hi, I'm stuck in the pipeline with the transposon_annotation_reasonaTE module where it parses all the annotations together. I saw there were a few other similar issues, but I haven't been able to resolve this yet. The specific error message is mustv2 refineBoundary error

vkeggers commented 1 month ago

So um I just changed the indexing for AnnotationParser.py, specifically:

line 511 is now: if(transposons[22]=="Full Copy"):

line 1230 is now: if(h.startswith("#=GF ID")):

line 1255 is now: seqTypeLabelA = seqType[0]

output might not be correct but it is running now