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DerKevinRiehl / TransposonUltimate

TransposonUltimate - a holistic set of tools for transposon identification
GNU General Public License v3.0
78 stars 5 forks source link

Output in format: Requested package -> Available versions #4

Open manaswini12356 opened 2 years ago

manaswini12356 commented 2 years ago

hiii I was trying to install transposon_annotation_tools. During installation I am getting an error : " Output in format: Requested package -> Available versions". kindly help me to resolve the issue. I am attaching a screenshot of the issue here. error1 I even tried to use mamba to install these packages but still giving an issue: error2

lybCNU commented 2 years ago

I recently installed transposon_annotation_tools succeed with command： mkdir transposon_annotation_tools_env/ conda create -y -c conda-forge -c bioconda -c derkevinriehl -p transposon_annotation_tools_env/ python=2.7 mamba conda genometools-genometools transposon_annotation_tools_proteinncbicdd1000 transposon_annotation_tools_transposonpsicli transposon_annotation_tools_mitetracker transposon_annotation_tools_helitronscanner transposon_annotation_tools_mitefinderii transposon_annotation_tools_mustv2 transposon_annotation_tools_sinefinder transposon_annotation_tools_sinescan=1.1.2 You can have a try!

DerKevinRiehl commented 2 years ago

Dear Li Yongbin, thanks for your message and support!

@Manaswil Maybe this was a temporary server issue of conda.

Could the guidance already help solving your issue?

Thanks, Best, Kevin

manaswini12356 commented 2 years ago

Dear Sir I am still facing the same issue. I tried with mamba and conda both but only the helitronscanner and mitefinderii are installed and rest of the tools are showing errors. with mamba i got issue as " nothing provides requested genometools-genometools". kindly look at this issue.

Thanks Manaswini

lybCNU commented 2 years ago

Maybe you should install package on LINUX!

Ramkyeri commented 1 year ago

mkdir transposon_annotation_tools_env/ conda create -y -c conda-forge -c bioconda -c derkevinriehl -p transposon_annotation_tools_env/ python=2.7 mamba conda genometools-genometools transposon_annotation_tools_proteinncbicdd1000 transposon_annotation_tools_transposonpsicli transposon_annotation_tools_mitetracker transposon_annotation_tools_helitronscanner transposon_annotation_tools_mitefinderii transposon_annotation_tools_mustv2 transposon_annotation_tools_sinefinder transposon_annotation_tools_sinescan=1.1.2

@lybCNU @DerKevinRiehl

Dear lybCNU thank you so much. Just I follow your command, and packages are installed without error. Many thanks to also @Kevin. I used ubuntu 20.04.5, first it showed in error in ubuntu 22.0

I also inculded this one "transposon_annotation_reasonate"

conda create -y -c conda-forge -c bioconda -c derkevinriehl -p transposon_annotation_tools_env/ python=2.7 mamba conda genometools-genometools transposon_annotation_toolsd1000 transposon_annotation_tools_transposonpsicli transposon_annotation_tools_mitetracker transposon_annotation_tools_helitronscanner transposon_annotation_tools_mitefinderii transposon_annotation_tools_mustv2 transposon_annotation_tools_sinefinder transposon_annotation_tools_sinescan=1.1.2 transposon_annotation_reasonate Collecting package metadata (current_repodata.json): done Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: done

==> WARNING: A newer version of conda exists. <== current version: 23.1.0 latest version: 23.3.1

Please update conda by running

$ conda update -n base -c defaults conda

Or to minimize the number of packages updated during conda update use

 conda install conda=23.3.1

Package Plan

environment location: /home/ramkyas20/transposon_annotation_tools_env

added / updated specs:

The following packages will be downloaded:

package                    |            build
---------------------------|-----------------
_libgcc_mutex-0.1          |      conda_forge           3 KB  conda-forge
_openmp_mutex-4.5          |            2_gnu          23 KB  conda-forge
alsa-lib-1.2.3.2           |       h166bdaf_0         554 KB  conda-forge
bedtools-2.30.0            |       h468198e_3        15.5 MB  bioconda
biopython-1.76             |   py27h516909a_0         2.6 MB  conda-forge
blast-2.13.0               |       hf3cf87c_0        22.4 MB  bioconda
blast-legacy-2.2.26        |       h9ee0642_3        35.5 MB  bioconda
blat-35                    |                1         1.7 MB  bioconda
brotlipy-0.7.0             |py27h516909a_1000         345 KB  conda-forge
bzip2-1.0.8                |       h7f98852_4         484 KB  conda-forge
c-ares-1.18.1              |       h7f98852_0         113 KB  conda-forge
ca-certificates-2022.12.7  |       ha878542_0         143 KB  conda-forge
cairo-1.16.0               |    h9f066cc_1006         1.5 MB  conda-forge
cd-hit-4.8.1               |       h5b5514e_7         205 KB  bioconda
certifi-2019.11.28         |   py27h8c360ce_1         149 KB  conda-forge
cffi-1.14.0                |   py27hd463f26_0         217 KB  conda-forge
chardet-3.0.4              |py27h8c360ce_1006         180 KB  conda-forge
clustalw-2.1               |       h9f5acd7_7         311 KB  bioconda
colorama-0.4.4             |     pyh9f0ad1d_0          18 KB  conda-forge
conda-4.8.3                |   py27h8c360ce_1         3.0 MB  conda-forge
conda-package-handling-1.6.0|   py27hdf8410d_2         937 KB  conda-forge
cryptography-2.8           |   py27h2c19f6a_2         609 KB  conda-forge
curl-7.87.0                |       h6312ad2_0          86 KB  conda-forge
docutils-0.16              |   py27h8c360ce_1         739 KB  conda-forge
dos2unix-7.4.1             |                0         313 KB  conda-forge
emboss-6.6.0               |       h6a414c2_3        94.0 MB  bioconda
entrez-direct-16.2         |       he881be0_1         7.5 MB  bioconda
enum34-1.1.10              |   py27h8c360ce_1          49 KB  conda-forge
expat-2.5.0                |       hcb278e6_1         134 KB  conda-forge
font-ttf-dejavu-sans-mono-2.37|       hab24e00_0         388 KB  conda-forge
fontconfig-2.14.2          |       h14ed4e7_0         266 KB  conda-forge
freetype-2.12.1            |       hca18f0e_1         611 KB  conda-forge
fribidi-1.0.10             |       h36c2ea0_0         112 KB  conda-forge
futures-3.3.0              |   py27h8c360ce_1          26 KB  conda-forge
genometools-genometools-1.6.2|   py27h6ad192e_0        19.8 MB  bioconda
gettext-0.21.1             |       h27087fc_0         4.1 MB  conda-forge
giflib-5.2.1               |       h0b41bf4_3          76 KB  conda-forge
graphite2-1.3.13           |    h58526e2_1001         102 KB  conda-forge
graphviz-2.42.3            |       h0511662_0         6.9 MB  conda-forge
harfbuzz-2.7.2             |       ha5b49bf_1         1.8 MB  conda-forge
icu-67.1                   |       he1b5a44_0        12.9 MB  conda-forge
idna-2.10                  |     pyh9f0ad1d_0          52 KB  conda-forge
ipaddress-1.0.23           |             py_0          19 KB  conda-forge
jpeg-9e                    |       h0b41bf4_3         235 KB  conda-forge
keyutils-1.6.1             |       h166bdaf_0         115 KB  conda-forge
krb5-1.20.1                |       hf9c8cef_0         1.3 MB  conda-forge
lcms2-2.14                 |       h6ed2654_0         256 KB  conda-forge
ld_impl_linux-64-2.40      |       h41732ed_0         688 KB  conda-forge
lerc-4.0.0                 |       h27087fc_0         275 KB  conda-forge
libblas-3.9.0              |16_linux64_openblas          13 KB  conda-forge
libcblas-3.9.0             |16_linux64_openblas          13 KB  conda-forge
libcurl-7.87.0             |       h6312ad2_0         339 KB  conda-forge
libdb-6.2.32               |       h9c3ff4c_0        23.3 MB  conda-forge
libdeflate-1.14            |       h166bdaf_0          81 KB  conda-forge
libedit-3.1.20191231       |       he28a2e2_2         121 KB  conda-forge
libev-4.33                 |       h516909a_1         104 KB  conda-forge
libexpat-2.5.0             |       hcb278e6_1          76 KB  conda-forge
libffi-3.2.1               |    he1b5a44_1007          47 KB  conda-forge
libgcc-ng-12.2.0           |      h65d4601_19         931 KB  conda-forge
libgd-2.2.5                |    h6e6070c_1008         297 KB  conda-forge
libgfortran-ng-12.2.0      |      h69a702a_19          22 KB  conda-forge
libgfortran5-12.2.0        |      h337968e_19         1.8 MB  conda-forge
libglib-2.66.3             |       hbe7bbb4_0         3.0 MB  conda-forge
libgomp-12.2.0             |      h65d4601_19         455 KB  conda-forge
libiconv-1.17              |       h166bdaf_0         1.4 MB  conda-forge
libidn2-2.3.4              |       h166bdaf_0         157 KB  conda-forge
liblapack-3.9.0            |16_linux64_openblas          13 KB  conda-forge
libnghttp2-1.51.0          |       hdcd2b5c_0         608 KB  conda-forge
libopenblas-0.3.21         |pthreads_h78a6416_3        10.1 MB  conda-forge
libpng-1.6.39              |       h753d276_0         276 KB  conda-forge
libsolv-0.7.23             |       h3eb15da_0         451 KB  conda-forge
libsqlite-3.40.0           |       h753d276_0         791 KB  conda-forge
libssh2-1.10.0             |       haa6b8db_3         234 KB  conda-forge
libstdcxx-ng-12.2.0        |      h46fd767_19         4.3 MB  conda-forge
libtiff-4.4.0              |       h82bc61c_5         473 KB  conda-forge
libtool-2.4.7              |       h27087fc_0         402 KB  conda-forge
libunistring-0.9.10        |       h7f98852_0         1.4 MB  conda-forge
libuuid-2.38.1             |       h0b41bf4_0          33 KB  conda-forge
libwebp-1.2.4              |       h522a892_0          87 KB  conda-forge
libwebp-base-1.2.4         |       h166bdaf_0         404 KB  conda-forge
libxcb-1.13                |    h7f98852_1004         391 KB  conda-forge
libxml2-2.9.10             |       h68273f3_2         1.3 MB  conda-forge
libxslt-1.1.33             |       hf705e74_1         540 KB  conda-forge
libzlib-1.2.13             |       h166bdaf_4          64 KB  conda-forge
mamba-0.1.0                |   py27hc9558a2_2          98 KB  conda-forge
muscle-5.1                 |       h9f5acd7_1         301 KB  bioconda
ncurses-6.3                |       h27087fc_1        1002 KB  conda-forge
numpy-1.16.5               |   py27h95a1406_0         4.3 MB  conda-forge
openjdk-11.0.8             |       hacce0ff_0       173.3 MB  conda-forge
openssl-1.1.1t             |       h0b41bf4_0         1.9 MB  conda-forge
paml-4.10.6                |       hec16e2b_0        1018 KB  bioconda
pandas-0.24.2              |   py27hb3f55d8_0        10.9 MB  conda-forge
pango-1.42.4               |       h69149e4_5         533 KB  conda-forge
patch-2.7.6                |    h7f98852_1002         121 KB  conda-forge
pcre-8.45                  |       h9c3ff4c_0         253 KB  conda-forge
perl-5.26.2                |    h36c2ea0_1008        15.4 MB  conda-forge
perl-aceperl-1.92          |          pl526_2         149 KB  bioconda
perl-algorithm-diff-1.1903 |          pl526_2          34 KB  bioconda
perl-algorithm-munkres-0.08|          pl526_1          11 KB  bioconda
perl-apache-test-1.40      |          pl526_1         115 KB  bioconda
perl-app-cpanminus-1.7044  |          pl526_1         234 KB  bioconda
perl-appconfig-1.71        |          pl526_1          42 KB  bioconda
perl-archive-tar-2.32      |          pl526_0          31 KB  bioconda
perl-array-compare-3.0.1   |          pl526_1          12 KB  bioconda
perl-autoloader-5.74       |          pl526_2           5 KB  bioconda
perl-base-2.23             |          pl526_1          10 KB  bioconda
perl-bio-asn1-entrezgene-1.73| pl5262hdfd78af_2          23 KB  bioconda
perl-bio-coordinate-1.007001| pl5262hdfd78af_2          35 KB  bioconda
perl-bio-featureio-1.6.905 | pl5262hdfd78af_3          40 KB  bioconda
perl-bio-phylo-0.58        | pl5262hdfd78af_3         310 KB  bioconda
perl-bio-samtools-1.43     |  pl526h1341992_1         172 KB  bioconda
perl-bio-tools-phylo-paml-1.7.3| pl5262hdfd78af_2          57 KB  bioconda
perl-bio-tools-run-alignment-clustalw-1.7.4| pl5262hdfd78af_2          25 KB  bioconda
perl-bio-tools-run-alignment-tcoffee-1.7.4| pl5262hdfd78af_3          24 KB  bioconda
perl-bioperl-1.7.2         |         pl526_11          13 KB  bioconda
perl-bioperl-core-1.007002 | pl5262hdfd78af_3         3.2 MB  bioconda
perl-bioperl-run-1.007002  | pl5262hdfd78af_5         431 KB  bioconda
perl-business-isbn-3.004   |          pl526_0          15 KB  bioconda
perl-business-isbn-data-20140910.003|          pl526_0          15 KB  bioconda
perl-cache-cache-1.08      |          pl526_0          31 KB  bioconda
perl-capture-tiny-0.48     |          pl526_0          17 KB  bioconda
perl-carp-1.38             |          pl526_3          15 KB  bioconda
perl-cgi-4.44              |  pl526h14c3975_1         116 KB  bioconda
perl-class-data-inheritable-0.08|          pl526_1           7 KB  bioconda
perl-class-inspector-1.34  |          pl526_0          14 KB  bioconda
perl-class-load-0.25       |          pl526_0          12 KB  bioconda
perl-class-load-xs-0.10    |  pl526h6bb024c_2          13 KB  bioconda
perl-class-method-modifiers-2.12|          pl526_0          13 KB  bioconda
perl-class-std-0.013       |          pl526_1          32 KB  bioconda
perl-clone-0.42            |  pl526h516909a_0          13 KB  bioconda
perl-common-sense-3.74     |          pl526_2          11 KB  bioconda
perl-compress-raw-bzip2-2.087|  pl526he1b5a44_0          44 KB  bioconda
perl-compress-raw-zlib-2.087|  pl526hc9558a2_0          72 KB  bioconda
perl-constant-1.33         |          pl526_1          10 KB  bioconda
perl-convert-binary-c-0.78 |  pl526h6bb024c_3         252 KB  bioconda
perl-convert-binhex-1.125  |          pl526_1          25 KB  bioconda
perl-crypt-rc4-2.02        |          pl526_1           8 KB  bioconda
perl-data-dumper-2.173     |          pl526_0          35 KB  bioconda
perl-data-optlist-0.110    |          pl526_2          10 KB  bioconda
perl-data-stag-0.14        |          pl526_1          78 KB  bioconda
perl-date-format-2.30      |          pl526_2          29 KB  bioconda
perl-db-file-1.855         |  pl526h516909a_0          53 KB  bioconda
perl-dbd-sqlite-1.64       |  pl526h516909a_0         2.3 MB  bioconda
perl-dbi-1.642             |          pl526_0         549 KB  bioconda
perl-devel-globaldestruction-0.14|          pl526_0           7 KB  bioconda
perl-devel-overloadinfo-0.005|          pl526_0           8 KB  bioconda
perl-devel-stacktrace-2.04 |          pl526_0          16 KB  bioconda
perl-digest-hmac-1.03      |          pl526_3           9 KB  bioconda
perl-digest-md5-2.55       |          pl526_0          18 KB  bioconda
perl-digest-perl-md5-1.9   |          pl526_1          11 KB  bioconda
perl-digest-sha1-2.13      |  pl526h6bb024c_1          20 KB  bioconda
perl-dist-checkconflicts-0.11|          pl526_2          10 KB  bioconda
perl-dynaloader-1.25       |          pl526_1           3 KB  bioconda
perl-email-date-format-1.005|          pl526_2           8 KB  bioconda
perl-encode-2.88           |          pl526_1         2.1 MB  bioconda
perl-encode-locale-1.05    |          pl526_6          11 KB  bioconda
perl-error-0.17027         |          pl526_1          20 KB  bioconda
perl-eval-closure-0.14     |  pl526h6bb024c_4          11 KB  bioconda
perl-exception-class-1.44  |          pl526_0          19 KB  bioconda
perl-exporter-5.72         |          pl526_1          13 KB  bioconda
perl-exporter-tiny-1.002001|          pl526_0          23 KB  bioconda
perl-extutils-makemaker-7.36|          pl526_1         153 KB  bioconda
perl-file-listing-6.04     |          pl526_1           9 KB  bioconda
perl-file-path-2.16        |          pl526_0          17 KB  bioconda
perl-file-slurp-tiny-0.004 |          pl526_1           8 KB  bioconda
perl-file-sort-1.01        |          pl526_2          18 KB  bioconda
perl-file-temp-0.2304      |          pl526_2          26 KB  bioconda
perl-file-which-1.23       |          pl526_0          12 KB  bioconda
perl-font-afm-1.20         |          pl526_2          14 KB  bioconda
perl-font-ttf-1.06         |          pl526_0         200 KB  bioconda
perl-gd-2.71               |  pl526he860b03_0         114 KB  bioconda
perl-getopt-long-2.50      |          pl526_1          27 KB  bioconda
perl-graph-0.9704          |          pl526_1          73 KB  bioconda
perl-graphviz-2.24         |  pl526h734ff71_0          36 KB  bioconda
perl-html-element-extended-1.18|          pl526_1          24 KB  bioconda
perl-html-entities-numbered-0.04|          pl526_1          11 KB  bioconda
perl-html-formatter-2.16   |          pl526_0          30 KB  bioconda
perl-html-parser-3.72      |  pl526h6bb024c_5          66 KB  bioconda
perl-html-tableextract-2.13|          pl526_2          23 KB  bioconda
perl-html-tagset-3.20      |          pl526_3          12 KB  bioconda
perl-html-tidy-1.60        |          pl526_0          20 KB  bioconda
perl-html-tree-5.07        |          pl526_1         129 KB  bioconda
perl-html-treebuilder-xpath-0.14|          pl526_1          12 KB  bioconda
perl-http-cookies-6.04     |          pl526_0          19 KB  bioconda
perl-http-daemon-6.01      |          pl526_1          14 KB  bioconda
perl-http-date-6.02        |          pl526_3          10 KB  bioconda
perl-http-message-6.18     |          pl526_0          51 KB  bioconda
perl-http-negotiate-6.01   |          pl526_3          13 KB  bioconda
perl-image-info-1.38       |          pl526_1          41 KB  bioconda
perl-image-size-3.300      |          pl526_2          26 KB  bioconda
perl-io-compress-2.087     |  pl526he1b5a44_0          81 KB  bioconda
perl-io-html-1.001         |          pl526_2          13 KB  bioconda
perl-io-sessiondata-1.03   |          pl526_1           8 KB  bioconda
perl-io-socket-ssl-2.066   |          pl526_0         151 KB  bioconda
perl-io-string-1.08        |          pl526_3          10 KB  bioconda
perl-io-stringy-2.111      |          pl526_1          35 KB  bioconda
perl-io-tty-1.12           |          pl526_1          30 KB  bioconda
perl-io-zlib-1.10          |          pl526_2           9 KB  bioconda
perl-ipc-run-20180523.0    |          pl526_0          74 KB  bioconda
perl-ipc-sharelite-0.17    |  pl526h6bb024c_1          24 KB  bioconda
perl-jcode-2.07            |          pl526_2          24 KB  bioconda
perl-json-4.02             |          pl526_0          52 KB  bioconda
perl-json-xs-2.34          |  pl526h6bb024c_3          63 KB  bioconda
perl-lib-0.63              |          pl526_1           6 KB  bioconda
perl-libwww-perl-6.39      |          pl526_0          94 KB  bioconda
perl-libxml-perl-0.08      |          pl526_2          38 KB  bioconda
perl-list-moreutils-0.428  |          pl526_1          28 KB  bioconda
perl-list-moreutils-xs-0.428|          pl526_0          43 KB  bioconda
perl-lwp-mediatypes-6.04   |          pl526_0          22 KB  bioconda
perl-lwp-protocol-https-6.07|          pl526_4           9 KB  bioconda
perl-lwp-simple-6.15       |  pl526h470a237_4         348 KB  bioconda
perl-mailtools-2.21        |          pl526_0          48 KB  bioconda
perl-math-cdf-0.1          |  pl526h14c3975_5          69 KB  bioconda
perl-math-derivative-1.01  |          pl526_0           9 KB  bioconda
perl-math-random-0.72      |  pl526h14c3975_2          55 KB  bioconda
perl-math-spline-0.02      |          pl526_2           8 KB  bioconda
perl-mime-base64-3.15      |          pl526_1          15 KB  bioconda
perl-mime-lite-3.030       |          pl526_1          51 KB  bioconda
perl-mime-tools-5.508      |          pl526_1         113 KB  bioconda
perl-mime-types-2.17       |          pl526_0          56 KB  bioconda
perl-mldbm-2.05            |          pl526_1          15 KB  bioconda
perl-module-implementation-0.09|          pl526_2           9 KB  bioconda
perl-module-runtime-0.016  |          pl526_1          15 KB  bioconda
perl-module-runtime-conflicts-0.003|          pl526_0           7 KB  bioconda
perl-moo-2.003004          |          pl526_0          38 KB  bioconda
perl-moose-2.2011          |  pl526hf484d3e_1         444 KB  bioconda
perl-mozilla-ca-20180117   |          pl526_1         140 KB  bioconda
perl-mro-compat-0.13       |          pl526_0          10 KB  bioconda
perl-net-http-6.19         |          pl526_0          19 KB  bioconda
perl-net-ssleay-1.88       |  pl526h90d6eec_0         289 KB  bioconda
perl-ntlm-1.09             |          pl526_4          15 KB  bioconda
perl-number-format-1.75    |          pl526_3          20 KB  bioconda
perl-ole-storage_lite-0.19 |          pl526_3          18 KB  bioconda
perl-package-deprecationmanager-0.17|          pl526_0          10 KB  bioconda
perl-package-stash-0.38    |  pl526hf484d3e_1          66 KB  bioconda
perl-package-stash-xs-0.28 |  pl526hf484d3e_1          21 KB  bioconda
perl-parallel-forkmanager-2.02|          pl526_0          21 KB  bioconda
perl-params-util-1.07      |  pl526h6bb024c_4          14 KB  bioconda
perl-parent-0.236          |          pl526_1           5 KB  bioconda
perl-parse-recdescent-1.967015|          pl526_0          71 KB  bioconda
perl-pathtools-3.75        |  pl526h14c3975_1          41 KB  bioconda
perl-pdf-api2-2.035        |          pl526_0         2.3 MB  bioconda
perl-pod-escapes-1.07      |          pl526_1          10 KB  bioconda
perl-pod-usage-1.69        |          pl526_1          13 KB  bioconda
perl-postscript-0.06       |          pl526_2          22 KB  bioconda
perl-role-tiny-2.000008    |          pl526_0          15 KB  bioconda
perl-scalar-list-utils-1.52|  pl526h516909a_0          38 KB  bioconda
perl-set-scalar-1.29       |          pl526_2          19 KB  bioconda
perl-soap-lite-1.19        |          pl526_1         117 KB  bioconda
perl-socket-2.027          |          pl526_1          31 KB  bioconda
perl-sort-naturally-1.03   |          pl526_2          14 KB  bioconda
perl-spreadsheet-parseexcel-0.65|          pl526_2          63 KB  bioconda
perl-spreadsheet-writeexcel-2.40|          pl526_2         259 KB  bioconda
perl-statistics-basic-1.6611|          pl526_2          32 KB  bioconda
perl-statistics-descriptive-3.0702|          pl526_0          32 KB  bioconda
perl-storable-3.15         |  pl526h14c3975_0          63 KB  bioconda
perl-sub-exporter-0.987    |          pl526_2          30 KB  bioconda
perl-sub-exporter-progressive-0.001013|          pl526_0           8 KB  bioconda
perl-sub-identify-0.14     |  pl526h14c3975_0          12 KB  bioconda
perl-sub-install-0.928     |          pl526_2          10 KB  bioconda
perl-sub-name-0.21         |          pl526_1          13 KB  bioconda
perl-sub-quote-2.006003    |          pl526_1          18 KB  bioconda
perl-sub-uplevel-0.2800    |  pl526h14c3975_2          13 KB  bioconda
perl-svg-2.84              |          pl526_0          37 KB  bioconda
perl-svg-graph-0.02        |          pl526_3          26 KB  bioconda
perl-task-weaken-1.06      |          pl526_0           8 KB  bioconda
perl-template-toolkit-2.26 |          pl526_1         319 KB  bioconda
perl-test-1.26             |          pl526_1          14 KB  bioconda
perl-test-deep-1.128       |          pl526_1          36 KB  bioconda
perl-test-differences-0.67 |          pl526_0          15 KB  bioconda
perl-test-exception-0.43   |          pl526_2          12 KB  bioconda
perl-test-harness-3.42     |          pl526_0          82 KB  bioconda
perl-test-leaktrace-0.16   |  pl526h14c3975_2          23 KB  bioconda
perl-test-most-0.35        |          pl526_0          18 KB  bioconda
perl-test-requiresinternet-0.05|          pl526_0           7 KB  bioconda
perl-test-warn-0.36        |          pl526_1          13 KB  bioconda
perl-text-diff-1.45        |          pl526_0          20 KB  bioconda
perl-tie-ixhash-1.23       |          pl526_2          11 KB  bioconda
perl-time-hires-1.9760     |  pl526h14c3975_1          25 KB  bioconda
perl-time-local-1.28       |          pl526_1          10 KB  bioconda
perl-timedate-2.30         |          pl526_1          29 KB  bioconda
perl-tree-dag_node-1.31    |          pl526_0          40 KB  bioconda
perl-try-tiny-0.30         |          pl526_1          17 KB  bioconda
perl-type-tiny-1.004004    |          pl526_0         119 KB  bioconda
perl-types-serialiser-1.0  |          pl526_2          10 KB  bioconda
perl-unicode-map-0.112     |  pl526h6bb024c_3         254 KB  bioconda
perl-uri-1.76              |          pl526_0          55 KB  bioconda
perl-www-robotrules-6.02   |          pl526_3          12 KB  bioconda
perl-xml-dom-1.46          |          pl526_0          56 KB  bioconda
perl-xml-dom-xpath-0.14    |          pl526_1           9 KB  bioconda
perl-xml-filter-buffertext-1.01|          pl526_2           7 KB  bioconda
perl-xml-libxml-2.0132     |  pl526h7ec2d77_1         260 KB  bioconda
perl-xml-libxslt-1.94      |          pl526_1          40 KB  bioconda
perl-xml-namespacesupport-1.12|          pl526_0          11 KB  bioconda
perl-xml-parser-2.44_01    |pl5262hc3e0081_1002         165 KB  conda-forge
perl-xml-regexp-0.04       |          pl526_2           8 KB  bioconda
perl-xml-sax-1.02          |          pl526_0          36 KB  bioconda
perl-xml-sax-base-1.09     |          pl526_0          19 KB  bioconda
perl-xml-sax-expat-0.51    |          pl526_3          10 KB  bioconda
perl-xml-sax-writer-0.57   |          pl526_0          16 KB  bioconda
perl-xml-simple-2.25       |          pl526_1          48 KB  bioconda
perl-xml-twig-3.52         |          pl526_2         144 KB  bioconda
perl-xml-writer-0.625      |          pl526_2          18 KB  bioconda
perl-xml-xpath-1.44        |          pl526_0          42 KB  bioconda
perl-xml-xpathengine-0.14  |          pl526_2          26 KB  bioconda
perl-xsloader-0.24         |          pl526_0           8 KB  bioconda
perl-yaml-1.29             |          pl526_0          41 KB  bioconda
pip-20.1.1                 |     pyh9f0ad1d_0         1.1 MB  conda-forge
pixman-0.40.0              |       h36c2ea0_0         627 KB  conda-forge
pthread-stubs-0.4          |    h36c2ea0_1001           5 KB  conda-forge
pycosat-0.6.3              |py27hdf8410d_1004         106 KB  conda-forge
pycparser-2.21             |     pyhd8ed1ab_0         100 KB  conda-forge
pyopenssl-19.1.0           |             py_1          47 KB  conda-forge
pysocks-1.7.1              |   py27h8c360ce_1          26 KB  conda-forge
python-2.7.15              |h5a48372_1011_cpython        12.2 MB  conda-forge
python-dateutil-2.8.1      |             py_0         220 KB  conda-forge
python_abi-2.7             |         1_cp27mu           4 KB  conda-forge
pytz-2020.1                |     pyh9f0ad1d_0         227 KB  conda-forge
readline-8.2               |       h8228510_1         275 KB  conda-forge
requests-2.25.1            |     pyhd3deb0d_0          51 KB  conda-forge
ruamel_yaml-0.15.80        |py27hdf8410d_1001         252 KB  conda-forge
setuptools-44.0.0          |           py27_0         663 KB  conda-forge
six-1.16.0                 |     pyh6c4a22f_0          14 KB  conda-forge
sqlite-3.40.0              |       h4ff8645_0         801 KB  conda-forge
statistics-1.0.3.5         |          py_1002          15 KB  conda-forge
t_coffee-11.0.8            |   py27hea885bf_8        33.2 MB  bioconda
tidyp-1.04                 |       hec16e2b_4         297 KB  bioconda
tk-8.6.12                  |       h27826a3_0         3.3 MB  conda-forge
tqdm-4.65.0                |     pyhd8ed1ab_0          86 KB  conda-forge
transposon_annotation_reasonate-1.0.3|                1         343 KB  derkevinriehl
transposon_annotation_tools_helitronscanner-1.0.0|                1        13.7 MB  derkevinriehl
transposon_annotation_tools_mitefinderii-1.0.0|                0         523 KB  derkevinriehl
transposon_annotation_tools_mitetracker-1.0.1|                1          27 KB  derkevinriehl
transposon_annotation_tools_mustv2-1.0.1|                0         4.2 MB  derkevinriehl
transposon_annotation_tools_proteinncbicdd1000-1.0.0|                1        74.6 MB  derkevinriehl
transposon_annotation_tools_sinefinder-1.0.1|                0          17 KB  derkevinriehl
transposon_annotation_tools_sinescan-1.1.2|         pl5262_0         2.0 MB  derkevinriehl
transposon_annotation_tools_transposonpsicli-1.0.0|                0         9.5 MB  derkevinriehl
urllib3-1.26.15            |     pyhd8ed1ab_0         110 KB  conda-forge
vsearch-2.22.1             |       hf1761c0_0         231 KB  bioconda
wget-1.20.3                |       ha56f1ee_1         804 KB  conda-forge
wheel-0.37.1               |     pyhd8ed1ab_0          31 KB  conda-forge
xorg-fixesproto-5.0        |    h7f98852_1002           9 KB  conda-forge
xorg-inputproto-2.3.2      |    h7f98852_1002          19 KB  conda-forge
xorg-kbproto-1.0.7         |    h7f98852_1002          27 KB  conda-forge
xorg-libice-1.0.10         |       h7f98852_0          58 KB  conda-forge
xorg-libsm-1.2.3           |    hd9c2040_1000          26 KB  conda-forge
xorg-libx11-1.8.4          |       h0b41bf4_0         810 KB  conda-forge
xorg-libxau-1.0.9          |       h7f98852_0          13 KB  conda-forge
xorg-libxdmcp-1.1.3        |       h7f98852_0          19 KB  conda-forge
xorg-libxext-1.3.4         |       h0b41bf4_2          49 KB  conda-forge
xorg-libxfixes-5.0.3       |    h7f98852_1004          18 KB  conda-forge
xorg-libxi-1.7.10          |       h7f98852_0          46 KB  conda-forge
xorg-libxpm-3.5.13         |       h7f98852_0          63 KB  conda-forge
xorg-libxrender-0.9.10     |    h7f98852_1003          32 KB  conda-forge
xorg-libxt-1.2.1           |       h7f98852_2         375 KB  conda-forge
xorg-libxtst-1.2.3         |    h7f98852_1002          31 KB  conda-forge
xorg-recordproto-1.14.2    |    h7f98852_1002           8 KB  conda-forge
xorg-renderproto-0.11.1    |    h7f98852_1002           9 KB  conda-forge
xorg-xextproto-7.3.0       |    h0b41bf4_1003          30 KB  conda-forge
xorg-xproto-7.0.31         |    h7f98852_1007          73 KB  conda-forge
xz-5.2.6                   |       h166bdaf_0         409 KB  conda-forge
yaml-0.2.5                 |       h7f98852_2          87 KB  conda-forge
zlib-1.2.13                |       h166bdaf_4          92 KB  conda-forge
zstd-1.5.2                 |       h3eb15da_6         410 KB  conda-forge
------------------------------------------------------------
                                       Total:       684.1 MB

The following NEW packages will be INSTALLED:

_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu alsa-lib conda-forge/linux-64::alsa-lib-1.2.3.2-h166bdaf_0 bedtools bioconda/linux-64::bedtools-2.30.0-h468198e_3 biopython conda-forge/linux-64::biopython-1.76-py27h516909a_0 blast bioconda/linux-64::blast-2.13.0-hf3cf87c_0 blast-legacy bioconda/linux-64::blast-legacy-2.2.26-h9ee0642_3 blat bioconda/linux-64::blat-35-1 brotlipy conda-forge/linux-64::brotlipy-0.7.0-py27h516909a_1000 bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4 c-ares conda-forge/linux-64::c-ares-1.18.1-h7f98852_0 ca-certificates conda-forge/linux-64::ca-certificates-2022.12.7-ha878542_0 cairo conda-forge/linux-64::cairo-1.16.0-h9f066cc_1006 cd-hit bioconda/linux-64::cd-hit-4.8.1-h5b5514e_7 certifi conda-forge/linux-64::certifi-2019.11.28-py27h8c360ce_1 cffi conda-forge/linux-64::cffi-1.14.0-py27hd463f26_0 chardet conda-forge/linux-64::chardet-3.0.4-py27h8c360ce_1006 clustalw bioconda/linux-64::clustalw-2.1-h9f5acd7_7 colorama conda-forge/noarch::colorama-0.4.4-pyh9f0ad1d_0 conda conda-forge/linux-64::conda-4.8.3-py27h8c360ce_1 conda-package-han~ conda-forge/linux-64::conda-package-handling-1.6.0-py27hdf8410d_2 cryptography conda-forge/linux-64::cryptography-2.8-py27h2c19f6a_2 curl conda-forge/linux-64::curl-7.87.0-h6312ad2_0 docutils conda-forge/linux-64::docutils-0.16-py27h8c360ce_1 dos2unix conda-forge/linux-64::dos2unix-7.4.1-0 emboss bioconda/linux-64::emboss-6.6.0-h6a414c2_3 entrez-direct bioconda/linux-64::entrez-direct-16.2-he881be0_1 enum34 conda-forge/linux-64::enum34-1.1.10-py27h8c360ce_1 expat conda-forge/linux-64::expat-2.5.0-hcb278e6_1 font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0 fontconfig conda-forge/linux-64::fontconfig-2.14.2-h14ed4e7_0 freetype conda-forge/linux-64::freetype-2.12.1-hca18f0e_1 fribidi conda-forge/linux-64::fribidi-1.0.10-h36c2ea0_0 futures conda-forge/linux-64::futures-3.3.0-py27h8c360ce_1 genometools-genom~ bioconda/linux-64::genometools-genometools-1.6.2-py27h6ad192e_0 gettext conda-forge/linux-64::gettext-0.21.1-h27087fc_0 giflib conda-forge/linux-64::giflib-5.2.1-h0b41bf4_3 graphite2 conda-forge/linux-64::graphite2-1.3.13-h58526e2_1001 graphviz conda-forge/linux-64::graphviz-2.42.3-h0511662_0 harfbuzz conda-forge/linux-64::harfbuzz-2.7.2-ha5b49bf_1 icu conda-forge/linux-64::icu-67.1-he1b5a44_0 idna conda-forge/noarch::idna-2.10-pyh9f0ad1d_0 ipaddress conda-forge/noarch::ipaddress-1.0.23-py_0 jpeg conda-forge/linux-64::jpeg-9e-h0b41bf4_3 keyutils conda-forge/linux-64::keyutils-1.6.1-h166bdaf_0 krb5 conda-forge/linux-64::krb5-1.20.1-hf9c8cef_0 lcms2 conda-forge/linux-64::lcms2-2.14-h6ed2654_0 ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0 lerc conda-forge/linux-64::lerc-4.0.0-h27087fc_0 libblas conda-forge/linux-64::libblas-3.9.0-16_linux64_openblas libcblas conda-forge/linux-64::libcblas-3.9.0-16_linux64_openblas libcurl conda-forge/linux-64::libcurl-7.87.0-h6312ad2_0 libdb conda-forge/linux-64::libdb-6.2.32-h9c3ff4c_0 libdeflate conda-forge/linux-64::libdeflate-1.14-h166bdaf_0 libedit conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2 libev conda-forge/linux-64::libev-4.33-h516909a_1 libexpat conda-forge/linux-64::libexpat-2.5.0-hcb278e6_1 libffi conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007 libgcc-ng conda-forge/linux-64::libgcc-ng-12.2.0-h65d4601_19 libgd conda-forge/linux-64::libgd-2.2.5-h6e6070c_1008 libgfortran-ng conda-forge/linux-64::libgfortran-ng-12.2.0-h69a702a_19 libgfortran5 conda-forge/linux-64::libgfortran5-12.2.0-h337968e_19 libglib conda-forge/linux-64::libglib-2.66.3-hbe7bbb4_0 libgomp conda-forge/linux-64::libgomp-12.2.0-h65d4601_19 libiconv conda-forge/linux-64::libiconv-1.17-h166bdaf_0 libidn2 conda-forge/linux-64::libidn2-2.3.4-h166bdaf_0 liblapack conda-forge/linux-64::liblapack-3.9.0-16_linux64_openblas libnghttp2 conda-forge/linux-64::libnghttp2-1.51.0-hdcd2b5c_0 libopenblas conda-forge/linux-64::libopenblas-0.3.21-pthreads_h78a6416_3 libpng conda-forge/linux-64::libpng-1.6.39-h753d276_0 libsolv conda-forge/linux-64::libsolv-0.7.23-h3eb15da_0 libsqlite conda-forge/linux-64::libsqlite-3.40.0-h753d276_0 libssh2 conda-forge/linux-64::libssh2-1.10.0-haa6b8db_3 libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-12.2.0-h46fd767_19 libtiff conda-forge/linux-64::libtiff-4.4.0-h82bc61c_5 libtool conda-forge/linux-64::libtool-2.4.7-h27087fc_0 libunistring conda-forge/linux-64::libunistring-0.9.10-h7f98852_0 libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 libwebp conda-forge/linux-64::libwebp-1.2.4-h522a892_0 libwebp-base conda-forge/linux-64::libwebp-base-1.2.4-h166bdaf_0 libxcb conda-forge/linux-64::libxcb-1.13-h7f98852_1004 libxml2 conda-forge/linux-64::libxml2-2.9.10-h68273f3_2 libxslt conda-forge/linux-64::libxslt-1.1.33-hf705e74_1 libzlib conda-forge/linux-64::libzlib-1.2.13-h166bdaf_4 mamba conda-forge/linux-64::mamba-0.1.0-py27hc9558a2_2 muscle bioconda/linux-64::muscle-5.1-h9f5acd7_1 ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1 numpy conda-forge/linux-64::numpy-1.16.5-py27h95a1406_0 openjdk conda-forge/linux-64::openjdk-11.0.8-hacce0ff_0 openssl conda-forge/linux-64::openssl-1.1.1t-h0b41bf4_0 paml bioconda/linux-64::paml-4.10.6-hec16e2b_0 pandas conda-forge/linux-64::pandas-0.24.2-py27hb3f55d8_0 pango conda-forge/linux-64::pango-1.42.4-h69149e4_5 patch conda-forge/linux-64::patch-2.7.6-h7f98852_1002 pcre conda-forge/linux-64::pcre-8.45-h9c3ff4c_0 perl conda-forge/linux-64::perl-5.26.2-h36c2ea0_1008 perl-aceperl bioconda/linux-64::perl-aceperl-1.92-pl526_2 perl-algorithm-di~ bioconda/linux-64::perl-algorithm-diff-1.1903-pl526_2 perl-algorithm-mu~ bioconda/linux-64::perl-algorithm-munkres-0.08-pl526_1 perl-apache-test bioconda/linux-64::perl-apache-test-1.40-pl526_1 perl-app-cpanminus bioconda/linux-64::perl-app-cpanminus-1.7044-pl526_1 perl-appconfig bioconda/linux-64::perl-appconfig-1.71-pl526_1 perl-archive-tar bioconda/linux-64::perl-archive-tar-2.32-pl526_0 perl-array-compare bioconda/linux-64::perl-array-compare-3.0.1-pl526_1 perl-autoloader bioconda/linux-64::perl-autoloader-5.74-pl526_2 perl-base bioconda/linux-64::perl-base-2.23-pl526_1 perl-bio-asn1-ent~ bioconda/noarch::perl-bio-asn1-entrezgene-1.73-pl5262hdfd78af_2 perl-bio-coordina~ bioconda/noarch::perl-bio-coordinate-1.007001-pl5262hdfd78af_2 perl-bio-featureio bioconda/noarch::perl-bio-featureio-1.6.905-pl5262hdfd78af_3 perl-bio-phylo bioconda/noarch::perl-bio-phylo-0.58-pl5262hdfd78af_3 perl-bio-samtools bioconda/linux-64::perl-bio-samtools-1.43-pl526h1341992_1 perl-bio-tools-ph~ bioconda/noarch::perl-bio-tools-phylo-paml-1.7.3-pl5262hdfd78af_2 perl-bio-tools-ru~ bioconda/noarch::perl-bio-tools-run-alignment-clustalw-1.7.4-pl5262hdfd78af_2 perl-bio-tools-ru~ bioconda/noarch::perl-bio-tools-run-alignment-tcoffee-1.7.4-pl5262hdfd78af_3 perl-bioperl bioconda/noarch::perl-bioperl-1.7.2-pl526_11 perl-bioperl-core bioconda/noarch::perl-bioperl-core-1.007002-pl5262hdfd78af_3 perl-bioperl-run bioconda/noarch::perl-bioperl-run-1.007002-pl5262hdfd78af_5 perl-business-isbn bioconda/linux-64::perl-business-isbn-3.004-pl526_0 perl-business-isb~ bioconda/linux-64::perl-business-isbn-data-20140910.003-pl526_0 perl-cache-cache bioconda/linux-64::perl-cache-cache-1.08-pl526_0 perl-capture-tiny bioconda/linux-64::perl-capture-tiny-0.48-pl526_0 perl-carp bioconda/linux-64::perl-carp-1.38-pl526_3 perl-cgi bioconda/linux-64::perl-cgi-4.44-pl526h14c3975_1 perl-class-data-i~ bioconda/linux-64::perl-class-data-inheritable-0.08-pl526_1 perl-class-inspec~ bioconda/linux-64::perl-class-inspector-1.34-pl526_0 perl-class-load bioconda/linux-64::perl-class-load-0.25-pl526_0 perl-class-load-xs bioconda/linux-64::perl-class-load-xs-0.10-pl526h6bb024c_2 perl-class-method~ bioconda/linux-64::perl-class-method-modifiers-2.12-pl526_0 perl-class-std bioconda/linux-64::perl-class-std-0.013-pl526_1 perl-clone bioconda/linux-64::perl-clone-0.42-pl526h516909a_0 perl-common-sense bioconda/linux-64::perl-common-sense-3.74-pl526_2 perl-compress-raw~ bioconda/linux-64::perl-compress-raw-bzip2-2.087-pl526he1b5a44_0 perl-compress-raw~ bioconda/linux-64::perl-compress-raw-zlib-2.087-pl526hc9558a2_0 perl-constant bioconda/linux-64::perl-constant-1.33-pl526_1 perl-convert-bina~ bioconda/linux-64::perl-convert-binary-c-0.78-pl526h6bb024c_3 perl-convert-binh~ bioconda/linux-64::perl-convert-binhex-1.125-pl526_1 perl-crypt-rc4 bioconda/linux-64::perl-crypt-rc4-2.02-pl526_1 perl-data-dumper bioconda/linux-64::perl-data-dumper-2.173-pl526_0 perl-data-optlist bioconda/linux-64::perl-data-optlist-0.110-pl526_2 perl-data-stag bioconda/linux-64::perl-data-stag-0.14-pl526_1 perl-date-format bioconda/linux-64::perl-date-format-2.30-pl526_2 perl-db-file bioconda/linux-64::perl-db-file-1.855-pl526h516909a_0 perl-dbd-sqlite bioconda/linux-64::perl-dbd-sqlite-1.64-pl526h516909a_0 perl-dbi bioconda/linux-64::perl-dbi-1.642-pl526_0 perl-devel-global~ bioconda/linux-64::perl-devel-globaldestruction-0.14-pl526_0 perl-devel-overlo~ bioconda/linux-64::perl-devel-overloadinfo-0.005-pl526_0 perl-devel-stackt~ bioconda/noarch::perl-devel-stacktrace-2.04-pl526_0 perl-digest-hmac bioconda/linux-64::perl-digest-hmac-1.03-pl526_3 perl-digest-md5 bioconda/linux-64::perl-digest-md5-2.55-pl526_0 perl-digest-perl-~ bioconda/linux-64::perl-digest-perl-md5-1.9-pl526_1 perl-digest-sha1 bioconda/linux-64::perl-digest-sha1-2.13-pl526h6bb024c_1 perl-dist-checkco~ bioconda/linux-64::perl-dist-checkconflicts-0.11-pl526_2 perl-dynaloader bioconda/linux-64::perl-dynaloader-1.25-pl526_1 perl-email-date-f~ bioconda/linux-64::perl-email-date-format-1.005-pl526_2 perl-encode bioconda/linux-64::perl-encode-2.88-pl526_1 perl-encode-locale bioconda/linux-64::perl-encode-locale-1.05-pl526_6 perl-error bioconda/linux-64::perl-error-0.17027-pl526_1 perl-eval-closure bioconda/linux-64::perl-eval-closure-0.14-pl526h6bb024c_4 perl-exception-cl~ bioconda/linux-64::perl-exception-class-1.44-pl526_0 perl-exporter bioconda/linux-64::perl-exporter-5.72-pl526_1 perl-exporter-tiny bioconda/linux-64::perl-exporter-tiny-1.002001-pl526_0 perl-extutils-mak~ bioconda/linux-64::perl-extutils-makemaker-7.36-pl526_1 perl-file-listing bioconda/linux-64::perl-file-listing-6.04-pl526_1 perl-file-path bioconda/linux-64::perl-file-path-2.16-pl526_0 perl-file-slurp-t~ bioconda/linux-64::perl-file-slurp-tiny-0.004-pl526_1 perl-file-sort bioconda/linux-64::perl-file-sort-1.01-pl526_2 perl-file-temp bioconda/linux-64::perl-file-temp-0.2304-pl526_2 perl-file-which bioconda/linux-64::perl-file-which-1.23-pl526_0 perl-font-afm bioconda/linux-64::perl-font-afm-1.20-pl526_2 perl-font-ttf bioconda/linux-64::perl-font-ttf-1.06-pl526_0 perl-gd bioconda/linux-64::perl-gd-2.71-pl526he860b03_0 perl-getopt-long bioconda/linux-64::perl-getopt-long-2.50-pl526_1 perl-graph bioconda/linux-64::perl-graph-0.9704-pl526_1 perl-graphviz bioconda/linux-64::perl-graphviz-2.24-pl526h734ff71_0 perl-html-element~ bioconda/linux-64::perl-html-element-extended-1.18-pl526_1 perl-html-entitie~ bioconda/linux-64::perl-html-entities-numbered-0.04-pl526_1 perl-html-formatt~ bioconda/linux-64::perl-html-formatter-2.16-pl526_0 perl-html-parser bioconda/linux-64::perl-html-parser-3.72-pl526h6bb024c_5 perl-html-tableex~ bioconda/linux-64::perl-html-tableextract-2.13-pl526_2 perl-html-tagset bioconda/linux-64::perl-html-tagset-3.20-pl526_3 perl-html-tidy bioconda/linux-64::perl-html-tidy-1.60-pl526_0 perl-html-tree bioconda/linux-64::perl-html-tree-5.07-pl526_1 perl-html-treebui~ bioconda/linux-64::perl-html-treebuilder-xpath-0.14-pl526_1 perl-http-cookies bioconda/linux-64::perl-http-cookies-6.04-pl526_0 perl-http-daemon bioconda/linux-64::perl-http-daemon-6.01-pl526_1 perl-http-date bioconda/linux-64::perl-http-date-6.02-pl526_3 perl-http-message bioconda/linux-64::perl-http-message-6.18-pl526_0 perl-http-negotia~ bioconda/linux-64::perl-http-negotiate-6.01-pl526_3 perl-image-info bioconda/linux-64::perl-image-info-1.38-pl526_1 perl-image-size bioconda/linux-64::perl-image-size-3.300-pl526_2 perl-io-compress bioconda/linux-64::perl-io-compress-2.087-pl526he1b5a44_0 perl-io-html bioconda/linux-64::perl-io-html-1.001-pl526_2 perl-io-sessionda~ bioconda/linux-64::perl-io-sessiondata-1.03-pl526_1 perl-io-socket-ssl bioconda/linux-64::perl-io-socket-ssl-2.066-pl526_0 perl-io-string bioconda/linux-64::perl-io-string-1.08-pl526_3 perl-io-stringy bioconda/linux-64::perl-io-stringy-2.111-pl526_1 perl-io-tty bioconda/linux-64::perl-io-tty-1.12-pl526_1 perl-io-zlib bioconda/linux-64::perl-io-zlib-1.10-pl526_2 perl-ipc-run bioconda/linux-64::perl-ipc-run-20180523.0-pl526_0 perl-ipc-sharelite bioconda/linux-64::perl-ipc-sharelite-0.17-pl526h6bb024c_1 perl-jcode bioconda/linux-64::perl-jcode-2.07-pl526_2 perl-json bioconda/linux-64::perl-json-4.02-pl526_0 perl-json-xs bioconda/linux-64::perl-json-xs-2.34-pl526h6bb024c_3 perl-lib bioconda/linux-64::perl-lib-0.63-pl526_1 perl-libwww-perl bioconda/noarch::perl-libwww-perl-6.39-pl526_0 perl-libxml-perl bioconda/linux-64::perl-libxml-perl-0.08-pl526_2 perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-0.428-pl526_1 perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-xs-0.428-pl526_0 perl-lwp-mediatyp~ bioconda/linux-64::perl-lwp-mediatypes-6.04-pl526_0 perl-lwp-protocol~ bioconda/linux-64::perl-lwp-protocol-https-6.07-pl526_4 perl-lwp-simple bioconda/linux-64::perl-lwp-simple-6.15-pl526h470a237_4 perl-mailtools bioconda/noarch::perl-mailtools-2.21-pl526_0 perl-math-cdf bioconda/linux-64::perl-math-cdf-0.1-pl526h14c3975_5 perl-math-derivat~ bioconda/linux-64::perl-math-derivative-1.01-pl526_0 perl-math-random bioconda/linux-64::perl-math-random-0.72-pl526h14c3975_2 perl-math-spline bioconda/linux-64::perl-math-spline-0.02-pl526_2 perl-mime-base64 bioconda/linux-64::perl-mime-base64-3.15-pl526_1 perl-mime-lite bioconda/linux-64::perl-mime-lite-3.030-pl526_1 perl-mime-tools bioconda/linux-64::perl-mime-tools-5.508-pl526_1 perl-mime-types bioconda/linux-64::perl-mime-types-2.17-pl526_0 perl-mldbm bioconda/linux-64::perl-mldbm-2.05-pl526_1 perl-module-imple~ bioconda/linux-64::perl-module-implementation-0.09-pl526_2 perl-module-runti~ bioconda/linux-64::perl-module-runtime-0.016-pl526_1 perl-module-runti~ bioconda/linux-64::perl-module-runtime-conflicts-0.003-pl526_0 perl-moo bioconda/linux-64::perl-moo-2.003004-pl526_0 perl-moose bioconda/linux-64::perl-moose-2.2011-pl526hf484d3e_1 perl-mozilla-ca bioconda/linux-64::perl-mozilla-ca-20180117-pl526_1 perl-mro-compat bioconda/linux-64::perl-mro-compat-0.13-pl526_0 perl-net-http bioconda/noarch::perl-net-http-6.19-pl526_0 perl-net-ssleay bioconda/linux-64::perl-net-ssleay-1.88-pl526h90d6eec_0 perl-ntlm bioconda/linux-64::perl-ntlm-1.09-pl526_4 perl-number-format bioconda/linux-64::perl-number-format-1.75-pl5263 perl-ole-storage~ bioconda/linux-64::perl-ole-storage_lite-0.19-pl526_3 perl-package-depr~ bioconda/linux-64::perl-package-deprecationmanager-0.17-pl526_0 perl-package-stash bioconda/linux-64::perl-package-stash-0.38-pl526hf484d3e_1 perl-package-stas~ bioconda/linux-64::perl-package-stash-xs-0.28-pl526hf484d3e_1 perl-parallel-for~ bioconda/linux-64::perl-parallel-forkmanager-2.02-pl526_0 perl-params-util bioconda/linux-64::perl-params-util-1.07-pl526h6bb024c_4 perl-parent bioconda/linux-64::perl-parent-0.236-pl526_1 perl-parse-recdes~ bioconda/linux-64::perl-parse-recdescent-1.967015-pl526_0 perl-pathtools bioconda/linux-64::perl-pathtools-3.75-pl526h14c3975_1 perl-pdf-api2 bioconda/noarch::perl-pdf-api2-2.035-pl526_0 perl-pod-escapes bioconda/linux-64::perl-pod-escapes-1.07-pl526_1 perl-pod-usage bioconda/linux-64::perl-pod-usage-1.69-pl526_1 perl-postscript bioconda/linux-64::perl-postscript-0.06-pl526_2 perl-role-tiny bioconda/noarch::perl-role-tiny-2.000008-pl526_0 perl-scalar-list-~ bioconda/linux-64::perl-scalar-list-utils-1.52-pl526h516909a_0 perl-set-scalar bioconda/linux-64::perl-set-scalar-1.29-pl526_2 perl-soap-lite bioconda/linux-64::perl-soap-lite-1.19-pl526_1 perl-socket bioconda/linux-64::perl-socket-2.027-pl526_1 perl-sort-natural~ bioconda/linux-64::perl-sort-naturally-1.03-pl526_2 perl-spreadsheet-~ bioconda/linux-64::perl-spreadsheet-parseexcel-0.65-pl526_2 perl-spreadsheet-~ bioconda/linux-64::perl-spreadsheet-writeexcel-2.40-pl526_2 perl-statistics-b~ bioconda/linux-64::perl-statistics-basic-1.6611-pl526_2 perl-statistics-d~ bioconda/linux-64::perl-statistics-descriptive-3.0702-pl526_0 perl-storable bioconda/linux-64::perl-storable-3.15-pl526h14c3975_0 perl-sub-exporter bioconda/linux-64::perl-sub-exporter-0.987-pl526_2 perl-sub-exporter~ bioconda/linux-64::perl-sub-exporter-progressive-0.001013-pl526_0 perl-sub-identify bioconda/linux-64::perl-sub-identify-0.14-pl526h14c3975_0 perl-sub-install bioconda/linux-64::perl-sub-install-0.928-pl526_2 perl-sub-name bioconda/linux-64::perl-sub-name-0.21-pl526_1 perl-sub-quote bioconda/linux-64::perl-sub-quote-2.006003-pl526_1 perl-sub-uplevel bioconda/linux-64::perl-sub-uplevel-0.2800-pl526h14c3975_2 perl-svg bioconda/linux-64::perl-svg-2.84-pl526_0 perl-svg-graph bioconda/linux-64::perl-svg-graph-0.02-pl526_3 perl-task-weaken bioconda/linux-64::perl-task-weaken-1.06-pl526_0 perl-template-too~ bioconda/linux-64::perl-template-toolkit-2.26-pl526_1 perl-test bioconda/linux-64::perl-test-1.26-pl526_1 perl-test-deep bioconda/linux-64::perl-test-deep-1.128-pl526_1 perl-test-differe~ bioconda/noarch::perl-test-differences-0.67-pl526_0 perl-test-excepti~ bioconda/linux-64::perl-test-exception-0.43-pl526_2 perl-test-harness bioconda/linux-64::perl-test-harness-3.42-pl526_0 perl-test-leaktra~ bioconda/linux-64::perl-test-leaktrace-0.16-pl526h14c3975_2 perl-test-most bioconda/linux-64::perl-test-most-0.35-pl526_0 perl-test-require~ bioconda/linux-64::perl-test-requiresinternet-0.05-pl526_0 perl-test-warn bioconda/linux-64::perl-test-warn-0.36-pl526_1 perl-text-diff bioconda/linux-64::perl-text-diff-1.45-pl526_0 perl-tie-ixhash bioconda/linux-64::perl-tie-ixhash-1.23-pl526_2 perl-time-hires bioconda/linux-64::perl-time-hires-1.9760-pl526h14c3975_1 perl-time-local bioconda/linux-64::perl-time-local-1.28-pl526_1 perl-timedate bioconda/linux-64::perl-timedate-2.30-pl526_1 perl-tree-dag_node bioconda/linux-64::perl-tree-dag_node-1.31-pl526_0 perl-try-tiny bioconda/linux-64::perl-try-tiny-0.30-pl526_1 perl-type-tiny bioconda/linux-64::perl-type-tiny-1.004004-pl526_0 perl-types-serial~ bioconda/linux-64::perl-types-serialiser-1.0-pl526_2 perl-unicode-map bioconda/linux-64::perl-unicode-map-0.112-pl526h6bb024c_3 perl-uri bioconda/linux-64::perl-uri-1.76-pl526_0 perl-www-robotrul~ bioconda/linux-64::perl-www-robotrules-6.02-pl526_3 perl-xml-dom bioconda/linux-64::perl-xml-dom-1.46-pl526_0 perl-xml-dom-xpath bioconda/linux-64::perl-xml-dom-xpath-0.14-pl526_1 perl-xml-filter-b~ bioconda/linux-64::perl-xml-filter-buffertext-1.01-pl526_2 perl-xml-libxml bioconda/linux-64::perl-xml-libxml-2.0132-pl526h7ec2d77_1 perl-xml-libxslt bioconda/linux-64::perl-xml-libxslt-1.94-pl526_1 perl-xml-namespac~ bioconda/linux-64::perl-xml-namespacesupport-1.12-pl526_0 perl-xml-parser conda-forge/linux-64::perl-xml-parser-2.44_01-pl5262hc3e0081_1002 perl-xml-regexp bioconda/linux-64::perl-xml-regexp-0.04-pl526_2 perl-xml-sax bioconda/noarch::perl-xml-sax-1.02-pl526_0 perl-xml-sax-base bioconda/linux-64::perl-xml-sax-base-1.09-pl526_0 perl-xml-sax-expat bioconda/linux-64::perl-xml-sax-expat-0.51-pl526_3 perl-xml-sax-writ~ bioconda/linux-64::perl-xml-sax-writer-0.57-pl526_0 perl-xml-simple bioconda/linux-64::perl-xml-simple-2.25-pl526_1 perl-xml-twig bioconda/linux-64::perl-xml-twig-3.52-pl526_2 perl-xml-writer bioconda/linux-64::perl-xml-writer-0.625-pl526_2 perl-xml-xpath bioconda/linux-64::perl-xml-xpath-1.44-pl526_0 perl-xml-xpatheng~ bioconda/linux-64::perl-xml-xpathengine-0.14-pl526_2 perl-xsloader bioconda/linux-64::perl-xsloader-0.24-pl526_0 perl-yaml bioconda/noarch::perl-yaml-1.29-pl526_0 pip conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0 pixman conda-forge/linux-64::pixman-0.40.0-h36c2ea0_0 pthread-stubs conda-forge/linux-64::pthread-stubs-0.4-h36c2ea0_1001 pycosat conda-forge/linux-64::pycosat-0.6.3-py27hdf8410d_1004 pycparser conda-forge/noarch::pycparser-2.21-pyhd8ed1ab_0 pyopenssl conda-forge/noarch::pyopenssl-19.1.0-py_1 pysocks conda-forge/linux-64::pysocks-1.7.1-py27h8c360ce_1 python conda-forge/linux-64::python-2.7.15-h5a48372_1011_cpython python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0 python_abi conda-forge/linux-64::python_abi-2.7-1_cp27mu pytz conda-forge/noarch::pytz-2020.1-pyh9f0ad1d_0 readline conda-forge/linux-64::readline-8.2-h8228510_1 requests conda-forge/noarch::requests-2.25.1-pyhd3deb0d_0 ruamel_yaml conda-forge/linux-64::ruamel_yaml-0.15.80-py27hdf8410d_1001 setuptools conda-forge/linux-64::setuptools-44.0.0-py27_0 six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 sqlite conda-forge/linux-64::sqlite-3.40.0-h4ff8645_0 statistics conda-forge/noarch::statistics-1.0.3.5-py_1002 t_coffee bioconda/linux-64::t_coffee-11.0.8-py27hea885bf_8 tidyp bioconda/linux-64::tidyp-1.04-hec16e2b_4 tk conda-forge/linux-64::tk-8.6.12-h27826a3_0 tqdm conda-forge/noarch::tqdm-4.65.0-pyhd8ed1ab_0 transposon_annota~ derkevinriehl/linux-64::transposon_annotation_reasonate-1.0.3-1 transposon_annota~ derkevinriehl/linux-64::transposon_annotation_tools_helitronscanner-1.0.0-1 transposon_annota~ derkevinriehl/linux-64::transposon_annotation_tools_mitefinderii-1.0.0-0 transposon_annota~ derkevinriehl/linux-64::transposon_annotation_tools_mitetracker-1.0.1-1 transposon_annota~ derkevinriehl/linux-64::transposon_annotation_tools_mustv2-1.0.1-0 transposon_annota~ derkevinriehl/linux-64::transposon_annotation_tools_proteinncbicdd1000-1.0.0-1 transposon_annota~ derkevinriehl/linux-64::transposon_annotation_tools_sinefinder-1.0.1-0 transposon_annota~ derkevinriehl/linux-64::transposon_annotation_tools_sinescan-1.1.2-pl5262_0 transposon_annota~ derkevinriehl/linux-64::transposon_annotation_tools_transposonpsicli-1.0.0-0 urllib3 conda-forge/noarch::urllib3-1.26.15-pyhd8ed1ab_0 vsearch bioconda/linux-64::vsearch-2.22.1-hf1761c0_0 wget conda-forge/linux-64::wget-1.20.3-ha56f1ee_1 wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0 xorg-fixesproto conda-forge/linux-64::xorg-fixesproto-5.0-h7f98852_1002 xorg-inputproto conda-forge/linux-64::xorg-inputproto-2.3.2-h7f98852_1002 xorg-kbproto conda-forge/linux-64::xorg-kbproto-1.0.7-h7f98852_1002 xorg-libice conda-forge/linux-64::xorg-libice-1.0.10-h7f98852_0 xorg-libsm conda-forge/linux-64::xorg-libsm-1.2.3-hd9c2040_1000 xorg-libx11 conda-forge/linux-64::xorg-libx11-1.8.4-h0b41bf4_0 xorg-libxau conda-forge/linux-64::xorg-libxau-1.0.9-h7f98852_0 xorg-libxdmcp conda-forge/linux-64::xorg-libxdmcp-1.1.3-h7f98852_0 xorg-libxext conda-forge/linux-64::xorg-libxext-1.3.4-h0b41bf4_2 xorg-libxfixes conda-forge/linux-64::xorg-libxfixes-5.0.3-h7f98852_1004 xorg-libxi conda-forge/linux-64::xorg-libxi-1.7.10-h7f98852_0 xorg-libxpm conda-forge/linux-64::xorg-libxpm-3.5.13-h7f98852_0 xorg-libxrender conda-forge/linux-64::xorg-libxrender-0.9.10-h7f98852_1003 xorg-libxt conda-forge/linux-64::xorg-libxt-1.2.1-h7f98852_2 xorg-libxtst conda-forge/linux-64::xorg-libxtst-1.2.3-h7f98852_1002 xorg-recordproto conda-forge/linux-64::xorg-recordproto-1.14.2-h7f98852_1002 xorg-renderproto conda-forge/linux-64::xorg-renderproto-0.11.1-h7f98852_1002 xorg-xextproto conda-forge/linux-64::xorg-xextproto-7.3.0-h0b41bf4_1003 xorg-xproto conda-forge/linux-64::xorg-xproto-7.0.31-h7f98852_1007 xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0 yaml conda-forge/linux-64::yaml-0.2.5-h7f98852_2 zlib conda-forge/linux-64::zlib-1.2.13-h166bdaf_4 zstd conda-forge/linux-64::zstd-1.5.2-h3eb15da_6

Downloading and Extracting Packages

Preparing transaction: done Verifying transaction: done Executing transaction: done #

To activate this environment, use

#

$ conda activate /home/ramkyas20/transposon_annotation_tools_env

#

To deactivate an active environment, use

#

$ conda deactivate

ramkyas20@Ramakrishnan:~$

Ramkyeri commented 1 year ago

@lybCNU

Dear @lybCNU I also request you, please give some suggestion to install repeatmodeler repeatmasker, sicne @DerKevinRiehl did not recommmend too install via conda.

also no error for " conda install -y -c anaconda biopython"

image