search

DerKevinRiehl / TransposonUltimate

TransposonUltimate - a holistic set of tools for transposon identification
GNU General Public License v3.0
75 stars 5 forks source link

Identifying non autonomous transposons #9

Open jannafierst opened 11 months ago

jannafierst commented 11 months ago

I'm interested in annotating autonomous vs non autonomous transposons. Is there a means to do that in TransposonUltimate - either in the output or intermediate files? Thanks!

DerKevinRiehl commented 11 months ago

Hello Janna Fierst, thanks for your interest in our work.

TransposonUltimate can only annotate Transposons in general, and also classify them according to the taxonomy we propose. You might then, based on the different transposon classes, decide which transposon class can be considered autonomous and which one not, and map that to a binary feature. grafik

Hope that helps, please ask if you need any more suggestions / support. Best, Kevin

jannafierst commented 11 months ago

Thanks! I'll try it