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DerKevinRiehl / transposon_annotation_reasonaTE

Transposon annotation tool "resonaTE" (part of TransposonUltimate)
GNU General Public License v3.0
16 stars 1 forks source link

issue with mustv2 #22

Open Ramkyeri opened 1 year ago

Ramkyeri commented 1 year ago

Dear Kevin,

Since mustv2 runs more than 20 days. I terminated the programme and split the genome, whereupon mustv2 issued the following errors.

Spliting the genome into 10 sub-genomes ... [SubFiles:10] [done] [Elapsed time: 0 seconds] Scanning the nucleotide sequences for potential MITEs ... Total calculation time elapsed: 146 seconds. Loading the annotation data ... [RawMITEs:54584] [done] [Time:3 seconds] Removing redundancy in the predicted MITEs ... [RuleBasedRemoving:3] [MITE:54581] [done] [Time:3 seconds] Clustering ... [BLAST] [done] [ClusterNum:1492] [Time:378 seconds] Deciding the strand information of each valid MITE ... [done] [Time:4 seconds] Saving the data ... [done] [ValidMITENum:6526] [Time:12 seconds] Screening for all the MITE copies ... [BackupMITEs:2078] [Templates:2078] [BLAT] [OtherCopy:1496] [AllCopySaved:3574]"/home/ram/transposon_annotation_tools_env/bin/MUST.r2-4-002.Release/refineBoundary.pl" "temp" 0.8 "temp/temp-genome-seq.fasta" "result.txt.be-filter1" "result.txt.be-filter2" -Error when refineBoundary!

while using demo file, there is no error.

Please send me your suggestion.

with regards

sahoo-rk commented 11 months ago

Hi Kevin, We too encounter the same error with "must"....... Error when refineBoundary! This troubles the downstream processes like parseAnnotation, which i raised at #16. Please suggest.

thanks,