Kraken2-build terminated by signal 13

[tsoratto]

Hi,

I'm trying to build a custom database for Fungi. I download the taxonomy and the library. And using the command: kraken2-build --build --db fungi_refseq200731/ --threads 18

I get the following error: Sequence ID to taxonomy ID map already present, skipping map creation. Estimating required capacity (step 2)... /proj/virus/tools/kraken2/2.0.9/scripts/build_kraken2_db.sh: line 101: estimate_capacity: command not found xargs: cat: terminated by signal 13

I'm using the last version of Kraken 2.0.9-beta and I installed it using the command: bash install_kraken2.sh ./

[lynngao]

Hi, have you fixed the xargs: cat: terminated by signal 13 problem? Thanks a lot!

[nicolo-tellini]

Hello all,

I am following the issue, has been the problem fixed ?

thanks

best

[Scott-0208]

Hi,

I'm trying to build a custom database for Fungi. I download the taxonomy and the library. And using the command: kraken2-build --build --db fungi_refseq200731/ --threads 18

I get the following error: Sequence ID to taxonomy ID map already present, skipping map creation. Estimating required capacity (step 2)... /proj/virus/tools/kraken2/2.0.9/scripts/build_kraken2_db.sh: line 101: estimate_capacity: command not found xargs: cat: terminated by signal 13

I'm using the last version of Kraken 2.0.9-beta and I installed it using the command: bash install_kraken2.sh ./

Hi, could you share how you solved the bug? Thank you. I'm now facing th following error: $ kraken2-build --threads $(nproc) --build --db microbe_nucleotide Creating sequence ID to taxonomy ID map (step 1)... Sequence ID to taxonomy ID map already present, skipping map creation. Estimating required capacity (step 2)... /home/scott/Desktop/kraken2/scripts/build_kraken2_db.sh: line 101: estimate_capacity: command not found xargs: cat: terminated by signal 13