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DerrickWood / kraken2

The second version of the Kraken taxonomic sequence classification system
MIT License
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--report-minimizer-data missing #441

Open DJFast opened 3 years ago

DJFast commented 3 years ago

Hi all,

I am interested in using KrakenUniq with kraken2, specifically the --report-minimizer-data. However, when I use the command as described in the manual I get "Unknown option: report-minimizer-data."

Has support for this feature been discontinued? Or, do I need to install KrakenUniq along with kraken2 to make this work? I am also doing this with paired end reads, is that a problem?

Thanks in advance.

mihkelvaher commented 3 years ago

I can confirm that it's working with Kraken version 2.1.1. Is the flag listed in the help?

kraken2 --threads $threads --db $krakenDb $sample --report $outReport --output $outOut --report-minimizer-data works

Yaooo999 commented 1 year ago

大家好

我对将KrakenUniq与kraken2一起使用感兴趣，特别是--report-minimizer-data。但是，当我按照手册中的描述使用命令时，我得到“未知选项：报告最小化器数据”。

是否停止了对此功能的支持？或者，我是否需要将KrakenUniq与kraken2一起安装才能完成这项工作？我也在用成对的结束读取来做这件事，这是一个问题吗？

提前谢谢。

Hello, I met the same problem with you. How did you solve it later? Thanks.