I have Kraken2 installed with conda and I am trying to build a database. I have done this before with no problems but today I am getting errors - it seems others are too.
`rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/128/725/GCF_900128725.1_BCifornacula_v1.0
rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/839/185/GCF_000839185.1_ViralProj14174
rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/945/GCF_000002945.1_ASM294v2
mv: replace 'assembly_summary.txt', overriding mode 0444 (r--r--r--)?
rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.39_GRCh38.p13
rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/762/265/GCF_000762265.1_ASM76226v1
rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/194/455/GCF_000194455.1_ASM19445v1
Creating sequence ID to taxonomy ID map (step 1)...
No preliminary seqid/taxid mapping files found, aborting.`
Does anyone have any resolutions?? Need this ASAP!
sglaberm
commented
2 years ago
I have Kraken2 installed with conda and I am trying to build a database. I have done this before with no problems but today I am getting errors - it seems others are too.
Does anyone have any resolutions?? Need this ASAP!