I'm trying to build a nt database, but the following happens.
First I downloaded the taxonomy, that seemed fine.
I then ran
kraken2-build --download-library nt --db 2022-nt
Output is as followed:
Downloading nt database from server... done.
Uncompressing nt database...done.
Parsing nt FASTA file.../scale_wlg_persistent/filesets/opt_nesi/CS400_centos7_bdw/Kraken2/2.1.2-GCC-11.3.0/bin/download_genomic_library.sh: line 38: 7678 Segmentation fault scan_fasta_file.pl --lenient $library_file >> prelim_map.txt
What is going wrong here and any ideas how to fix it?
Hey,
I'm trying to build a nt database, but the following happens.
First I downloaded the taxonomy, that seemed fine.
I then ran kraken2-build --download-library nt --db 2022-nt
Output is as followed: Downloading nt database from server... done. Uncompressing nt database...done. Parsing nt FASTA file.../scale_wlg_persistent/filesets/opt_nesi/CS400_centos7_bdw/Kraken2/2.1.2-GCC-11.3.0/bin/download_genomic_library.sh: line 38: 7678 Segmentation fault scan_fasta_file.pl --lenient $library_file >> prelim_map.txt
What is going wrong here and any ideas how to fix it?