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DerrickWood / kraken2

The second version of the Kraken taxonomic sequence classification system
MIT License
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new ftp server for kraken2-build? #682

Open rob26220 opened 1 year ago

rob26220 commented 1 year ago

Dear Derrick, Thanks for your work on this tool. I cannot build any database from those retrived at the monagash site The command and the messare are the following:

sudo kraken2-build --standard --db ncbi_r88_human17k_kraken2_32gb Password: Downloading nucleotide gb accession to taxon map... done. Downloading nucleotide wgs accession to taxon map... done. Downloaded accession to taxon map(s) Downloading taxonomy tree data... done. Uncompressing taxonomy data... done. Untarring taxonomy tree data... done. rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/762/265/GCF_000762265.1_ASM76226v1

Thanks in advance for your help in this issue Roberto

HarryHung commented 1 year ago

Refer to this for a fix https://github.com/DerrickWood/kraken2/issues/292#issuecomment-1206837801