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DerrickWood / kraken2

The second version of the Kraken taxonomic sequence classification system
MIT License
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No k2mask in path #709

Closed aebordoy closed 1 year ago

aebordoy commented 1 year ago

I am trying to build the Standard NCBI DataBase, but I get the following error message:

Masking low-complexity regions of downloaded library...Unable to find k2mask in path, can't mask low-complexity sequences

It seems to be related to issue #116 . NCBI suite is installed and dustmaker is available but k2mask is not.

Does anyone have an idea how to solve the problem? Thanks in advance

ch4rr0 commented 1 year ago

Hello,

Did you build the k2mask binary? If not, you may need to run make k2mask from the src directory. Once the binary is built make sure that it is copied to a directory listed in your $PATH. Let me know if this helps.

aebordoy commented 1 year ago

Hi,

It did work! Thank you so much!