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DerrickWood / kraken2

The second version of the Kraken taxonomic sequence classification system
MIT License
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Is it possible to get the full taxonomy for each taxid number of classified sequences? #723

Open B-1991-ing opened 1 year ago

B-1991-ing commented 1 year ago

Hi Derrick,

Is it possible to get the full taxonomy for each taxid number of classified sequences?

Screenshot 2023-05-27 at 09 24 18

For example, the taxi 356?

Best,

Bing

B-1991-ing commented 1 year ago

Update

Found one script - https://github.com/zmunro/KrakenTools/tree/master#kraken2_translatepy, which was merged into main fork of KrakenTools (https://github.com/jenniferlu717/KrakenTools) but didn't appear in the downloaded KrakenTools folder.

Best,

Bing

zhangq220 commented 9 months ago

I met the same problem, looking forward to the authors reply. thanks a lot. Qian

jenniferlu717 commented 9 months ago

If you upload the reports in Pavian, that will give you the full path in the comparison table https://github.com/fbreitwieser/pavian