I have a question regarding an error in the "kmer_distrib" file in PlusPFP.
I've noticed that the "kmer_distrib" file in PlusPFP is much smaller compared to the one in PlusPFP-8. This seems to result in the absence of many species when using PlusPFP. Has anyone else encountered a similar issue? Could you please advise on how to resolve it?
Thank you for your attention.
Best regards,
Files in k2_pluspfp_20230605.tar.gz :
total 256G
-rw-r--r-- 1 dyjiang dyjiang 86K Jun 5 11:51 database100mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 76K Jun 5 13:01 database150mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 69K Jun 5 14:24 database200mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 62K Jun 5 15:58 database250mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 56K Jun 5 17:44 database300mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 111K Jun 9 13:13 database50mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 97K Jun 5 10:52 database75mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 148G Jun 5 09:27 hash.k2d
-rw-r--r-- 1 dyjiang dyjiang 3.1M Jun 5 09:47 inspect.txt
-rw-rw-r-- 1 dyjiang dyjiang 108G Jun 10 14:51 k2_pluspfp_20230605.tar.gz
-rw-r--r-- 1 dyjiang dyjiang 2.4M Jun 5 09:48 ktaxonomy.tsv
-rw------- 1 dyjiang dyjiang 270 Jun 19 13:00 nohup.out
-rw-r--r-- 1 dyjiang dyjiang 64 Jun 5 09:27 opts.k2d
-rw-r--r-- 1 dyjiang dyjiang 41M Jun 4 11:54 seqid2taxid.map
-rw-r--r-- 1 dyjiang dyjiang 3.6M Jun 4 14:09 taxo.k2d
-rw-rw-r-- 1 dyjiang dyjiang 176M Jun 17 01:03 wget-log
Files in k2_pluspfp_08gb_20230605.tar.gz :
total 13G
-rw-r--r-- 1 dyjiang dyjiang 4.7M Jun 5 06:06 database100mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 4.8M Jun 5 09:41 database150mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 4.7M Jun 5 13:50 database200mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 4.7M Jun 5 18:31 database250mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 4.5M Jun 5 23:49 database300mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 4.4M Jun 5 00:43 database50mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 4.6M Jun 5 03:12 database75mers.kmer_distrib
-rw-r--r-- 1 dyjiang dyjiang 7.5G Jun 4 22:12 hash.k2d
-rw-r--r-- 1 dyjiang dyjiang 3.0M Jun 4 22:13 inspect.txt
-rw-rw-r-- 1 dyjiang dyjiang 5.2G Jun 7 13:39 k2_pluspfp_08gb_20230605.tar.gz
-rw-r--r-- 1 dyjiang dyjiang 2.4M Jun 4 22:14 ktaxonomy.tsv
-rw-r--r-- 1 dyjiang dyjiang 64 Jun 4 22:12 opts.k2d
-rw-r--r-- 1 dyjiang dyjiang 41M Jun 4 15:41 seqid2taxid.map
-rw-r--r-- 1 dyjiang dyjiang 3.6M Jun 4 17:57 taxo.k2d
-rw-rw-r-- 1 dyjiang dyjiang 8.3M Jun 19 13:23 wget-log
Hello,
I have a question regarding an error in the "kmer_distrib" file in PlusPFP.
I've noticed that the "kmer_distrib" file in PlusPFP is much smaller compared to the one in PlusPFP-8. This seems to result in the absence of many species when using PlusPFP. Has anyone else encountered a similar issue? Could you please advise on how to resolve it?
Thank you for your attention.
Best regards,
Files in k2_pluspfp_20230605.tar.gz : total 256G -rw-r--r-- 1 dyjiang dyjiang 86K Jun 5 11:51 database100mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 76K Jun 5 13:01 database150mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 69K Jun 5 14:24 database200mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 62K Jun 5 15:58 database250mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 56K Jun 5 17:44 database300mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 111K Jun 9 13:13 database50mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 97K Jun 5 10:52 database75mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 148G Jun 5 09:27 hash.k2d -rw-r--r-- 1 dyjiang dyjiang 3.1M Jun 5 09:47 inspect.txt -rw-rw-r-- 1 dyjiang dyjiang 108G Jun 10 14:51 k2_pluspfp_20230605.tar.gz -rw-r--r-- 1 dyjiang dyjiang 2.4M Jun 5 09:48 ktaxonomy.tsv -rw------- 1 dyjiang dyjiang 270 Jun 19 13:00 nohup.out -rw-r--r-- 1 dyjiang dyjiang 64 Jun 5 09:27 opts.k2d -rw-r--r-- 1 dyjiang dyjiang 41M Jun 4 11:54 seqid2taxid.map -rw-r--r-- 1 dyjiang dyjiang 3.6M Jun 4 14:09 taxo.k2d -rw-rw-r-- 1 dyjiang dyjiang 176M Jun 17 01:03 wget-log
Files in k2_pluspfp_08gb_20230605.tar.gz : total 13G -rw-r--r-- 1 dyjiang dyjiang 4.7M Jun 5 06:06 database100mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 4.8M Jun 5 09:41 database150mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 4.7M Jun 5 13:50 database200mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 4.7M Jun 5 18:31 database250mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 4.5M Jun 5 23:49 database300mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 4.4M Jun 5 00:43 database50mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 4.6M Jun 5 03:12 database75mers.kmer_distrib -rw-r--r-- 1 dyjiang dyjiang 7.5G Jun 4 22:12 hash.k2d -rw-r--r-- 1 dyjiang dyjiang 3.0M Jun 4 22:13 inspect.txt -rw-rw-r-- 1 dyjiang dyjiang 5.2G Jun 7 13:39 k2_pluspfp_08gb_20230605.tar.gz -rw-r--r-- 1 dyjiang dyjiang 2.4M Jun 4 22:14 ktaxonomy.tsv -rw-r--r-- 1 dyjiang dyjiang 64 Jun 4 22:12 opts.k2d -rw-r--r-- 1 dyjiang dyjiang 41M Jun 4 15:41 seqid2taxid.map -rw-r--r-- 1 dyjiang dyjiang 3.6M Jun 4 17:57 taxo.k2d -rw-rw-r-- 1 dyjiang dyjiang 8.3M Jun 19 13:23 wget-log