DerrickWood / kraken2

The second version of the Kraken taxonomic sequence classification system
MIT License
687 stars 267 forks source link

RDP no longer available #736

Open douglasgscofield opened 1 year ago

douglasgscofield commented 1 year ago

The RDP database is no longer available: https://www.canr.msu.edu/cme/resources/

RIBOSOMAL DATABASE PROJECT The RDP website is no longer available.

Attempts to download get

Connecting to rdp.cme.msu.edu (rdp.cme.msu.edu)|35.8.164.79|:80... failed: No route to host.

I cannot find an alternative source, all links lead to this now-shuttered site.

mmc71 commented 8 months ago

Hello, I'm experiencing something similar with : http://rdp.cme.msu.edu/

Connection to 35.8.164.79 failed. The system returned: (65) No route to host The remote host or network is down. Please try the request again.

🤔

FreddieLPF commented 6 months ago

Same error here with kraken2 version 2.1.1:

--2023-12-19 14:54:47--  http://rdp.cme.msu.edu//\
download//current_Bacteria_unaligned.fa.gz
Resolving rdp.cme.msu.edu (rdp.cme.msu.edu)... 35.8.164.79
Connecting to rdp.cme.msu.edu (rdp.cme.msu.edu)|35.8.164.79|:80... failed: Connection timed out.
Retrying.

--2023-12-19 14:56:57--  (try: 2)  http://rdp.cme.msu.edu//download//current_Bacteria_unaligned.fa.gz
Connecting to rdp.cme.msu.edu (rdp.cme.msu.edu)|35.8.164.79|:80... failed: Connection timed out.
Retrying.

--2023-12-19 14:59:09--  (try: 3)  http://rdp.cme.msu.edu//download//current_Bacteria_unaligned.fa.gz
Connecting to rdp.cme.msu.edu (rdp.cme.msu.edu)|35.8.164.79|:80... failed: Connection timed out.
Retrying.

.....
--2023-12-19 15:35:57--  (try:19)  http://rdp.cme.msu.edu//download//current_Bacteria_unaligned.fa.gz
Connecting to rdp.cme.msu.edu (rdp.cme.msu.edu)|35.8.164.79|:80... failed: Connection timed out.
Retrying.

--2023-12-19 15:38:16--  (try:20)  http://rdp.cme.msu.edu//download//current_Bacteria_unaligned.fa.gz
Connecting to rdp.cme.msu.edu (rdp.cme.msu.edu)|35.8.164.79|:80... failed: Connection timed out.
Giving up.

Any idea how to fix it? @DerrickWood @jenniferlu717