I read in the Kraken2 FAQ that you prefer to keep read assigned with low confidence and filter using the minimizer statistics instead. Would you be able to share the threshold you use for this approach? Do you take reference genome complexity into account?
Dear @jenniferlu717 and team,
I read in the Kraken2 FAQ that you prefer to keep read assigned with low confidence and filter using the minimizer statistics instead. Would you be able to share the threshold you use for this approach? Do you take reference genome complexity into account?
Thank you!
Bryan