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DerrickWood / kraken2

The second version of the Kraken taxonomic sequence classification system
MIT License
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Unexpected FTP path #815

Open Bahnie opened 6 months ago

Bahnie commented 6 months ago

Hi everyone,

Just hoping to have a bit of help, trying to install the kraken2 databases (have latest version) but getting the following message rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/458/655/GCF_001458655.1_Mb9.

I've seen previous issues with this - so have tried to troubleshoot - have changed the rsync script to https:// from ftp as suggested (did have gtp|https initially).

Any thoughts would be much appreciated! (I'm new to all this so probably missing something simple)

jjoropezav commented 5 months ago

Hi, had the same problems days ago, im currently trying this approach modifying the rsync file, hope it works for you rsync_from_ncbi.pl.txt just eliminate the txt extension

regards

jonbra commented 5 months ago

Hi, I have the same problem. Both with and without the --use-ftp argument.

Scott-0208 commented 2 months ago

Hi, had the same problems days ago, im currently trying this approach modifying the rsync file, hope it works for you rsync_from_ncbi.pl.txt just eliminate the txt extension

regards

Thanks for offering solution. So what is the entire command we have to use? Thank you