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DerrickWood / kraken2

The second version of the Kraken taxonomic sequence classification system
MIT License
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scan_fasta_file.pl: unable to determine taxonomy ID for sequence #856

Open amara86 opened 1 month ago

amara86 commented 1 month ago

Hi, I am trying to add genome of interest into my kraken database. The genome is not available on NCBI and I have downloaded it from somewhere else. The tax IDs for the genome are present in both nodes.dmp and names.dmp files but still kraken2 is not recognizing it. The genome sequence header are like this

Acropora_loripes_1 I tried Acropora loripes 1 Acropora_loripes 1 but still getting the error scan_fasta_file.pl: unable to determine taxonomy ID for sequence Acropora_loripes error

ChillarAnand commented 1 month ago

Does the downloaded fasta file has taxid?