abort_on_error is now abort_on_first in pyshacl

[fils]

I'm submitting a

• [X ] bug report. (not really a bug.. just a deprecation by pyshacl to address
• [ ] feature request.

Current Behaviour:

Running pyshacl return a warning

_Usage of abort_on_error is deprecated. Use abort_onfirst instead.

Which is annoying when processing 1K files via dask :)

Expected Behaviour:

no such warning

Steps to reproduce:

Validate with pyshacl.. You can see this error in pages like https://derwen.ai/docs/kgl/ex5_0/ too.

Environment:

I have my environment file at https://github.com/gleanerio/notebooks/blob/master/environment.yml but it's not really needed with this.

Ref https://github.com/RDFLib/pySHACL to see

from pyshacl import validate
r = validate(data_graph,
      shacl_graph=sg,
      ont_graph=og,
      inference='rdfs',
      abort_on_first=False,
      allow_warnings=False,
      meta_shacl=False,
      advanced=False,
      js=False,
      debug=False)
conforms, results_graph, results_text = r

The fix is simple (I hope). Just edit the file https://github.com/DerwenAI/kglab/blob/b93dbd31446392cbe5f274c4dd113af06befea00/kglab/kglab.py

Replace abort_on_error with abort_on_first

I think that is all that is needed.

[fils]

made a pull request for this.. it was so simple even I could do it.. ;)

[ceteri]

Many thanks @fils , does this update now work better?

We bumped the pySHACL version as well, and have added you into the committers list!

[ceteri]

https://pypi.org/project/kglab now @ 0.4.2

[fils]

@ceteri everything is working great.. no more message and everything runs for me..

[ceteri]

Awesome, thank you @fils
I'll try to troubleshoot on the other issue – the library adjusted some settings to align with RDFlib v6