Support python >3.11

[vkkodali]

I am getting the following error when I try to install using the PyPI package:

$ pip install omark
...
  × python setup.py egg_info did not run successfully.
  │ exit code: 1
  ╰─> [8 lines of output]
      Traceback (most recent call last):
        File "<string>", line 2, in <module>
        File "<pip-setuptools-caller>", line 34, in <module>
        File "/tmp/pip-install-7w1t_vv2/numba_98834001f5d44d129c594eaf45126ad3/setup.py", line 51, in <module>
          _guard_py_ver()
        File "/tmp/pip-install-7w1t_vv2/numba_98834001f5d44d129c594eaf45126ad3/setup.py", line 48, in _guard_py_ver
          raise RuntimeError(msg.format(cur_py, min_py, max_py))
      RuntimeError: Cannot install on Python version 3.11.2; only versions >=3.7,<3.11 are supported.
      [end of output]

Is there anything specific that requires the python version to be <3.11? Can the requirements be amended to include python versions above 3.11 as well?

[YanNevers]

Hello @vkkodali.

It appears this is due to Numba, a dependency of OMAmer, not being yet compatible with Python 3.11. It should be fixed with the release of the version 0.57 of Numba. (see https://github.com/numba/numba/issues/8304 for more details). Unfortunately, we can't amend this requirement since it inherited from a dependency. However, we will keep this issue open until the release of Numba 0.57, which is expected to be happen soon. In the meantime, we recommend using OMArk with earlier versions of Python.

[vkkodali]

Thank you @YanNevers For now, I am able to use python 3.9.16.

[YanNevers]

Now compatible with Python 3.11. Compatibility issue with Python 3.12 for the same reasons.