Is Orthofinder's orhoXML output option compatible with Pyham?
I used the following code to run it:
orthofinder.py -f ./protein_files/ -M msa -x species_info
where protein_files is a folder with all of the protein files for each specie and
species_info is a text file with some information about the species required for orthoxml format
Hello,
Is Orthofinder's orhoXML output option compatible with Pyham?
I used the following code to run it:
orthofinder.py -f ./protein_files/ -M msa -x species_infowhere protein_files is a folder with all of the protein files for each specie and species_info is a text file with some information about the species required for orthoxml format
I see Orthofinder is not included in the table of compatibility here: https://github.com/DessimozLab/pyham#table-of-compatibility
Is it currently not possible to use Orthofinder?
Thank you