Open ethanbass opened 4 years ago
It appears that HOG 8703 is the first HOG that is triggering the error. The problem is that the 'ancestral genome' is also an 'extant genome': Methanoccoccus maripaludis. I'm not sure what the appropriate way is to deal with this? Should this node have an 'ancestral genome' object and an 'extant genome' object?
Hello Ethan,
Just a few word to inform you that i'm investigating on this bug.
Also, I strongly recommend you to use the phyloxml tree instead of the newick tree !
Clement
Thank you very much for investigating. FIY, the same bug arises when using the phyloxml tree.
Hi, I am trying to set up a HAM from the latest OMA release (https://omabrowser.org/oma/current/) as in the tutorial here (https://zoo.cs.ucl.ac.uk/tutorials/tutorial_pyHam_get_started.html).
It comes back with the following error:
I would appreciate any insights into what might be causing this problem. Ethan