dna_reference not parsed when file extension is not .fa

DessimozLab / read2tree

a tool for inferring species tree from sequencing reads

MIT License

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dna_reference not parsed when file extension is not .fa #44

Closed Banthandor closed 1 year ago

Banthandor commented 1 year ago

Hi,

I tried using the --dna_reference option, but the argument was never parsed and directly started using REST api to download the corresponding dna seq. The file had a .fna extension, but this prevented the option from being used.

Changing the extension to .fa resolved the issue.

You might want to make this clear in the wiki or make this option more dynamic.

Kind regards, Sam

sinamajidian commented 1 year ago

Dear Sam

Thanks for your feedback. I've updated the wiki.

Best regards, Sina