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DessimozLab / read2tree

a tool for inferring species tree from sequencing reads
MIT License
144 stars 18 forks source link

installation error #48

Closed laseulefourmie closed 1 year ago

laseulefourmie commented 1 year ago

Unfortunately, the installation with conda fails on our Linux system Ubuntu 16.04.7 LTS. After creating and activating a conda environment as suggested in the installation manual on github, I get:

`conda install -c bioconda read2tree Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: / Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versionsThe following specifications were found to be incompatible with your system:

Your installed version is: 2.27 `

Any advice would be greatly appreciated.

sinamajidian commented 1 year ago

Dear @laseulefourmie Thanks for using read2tree. Please try installation from source or use mamba mamba create -n r2t -c conda-forge -c bioconda python=3.10.8 read2tree. Please let us know the result.

laseulefourmie commented 1 year ago

Dear Sina,

thanks.

installation with mamba worked, from source did not work.

Best, Lukas

FREIE UNIVERSITÄT BERLIN / FREE UNIVERSITY OF BERLIN Pharmazeutische Biologie / Pharmaceutical Biology Königin-Luise-Str. 2+4, D-14195 Berlin

Von: Sina Majidian @.***> Gesendet: Donnerstag, 19. Oktober 2023 09:21:39 An: DessimozLab/read2tree Cc: Koch, Lukas; Author Betreff: Re: [DessimozLab/read2tree] installation error (Issue #48)

Dear Thanks for using read2tree. Please try installation from sourcehttps://github.com/DessimozLab/read2tree#3-installation-from-source or use mamba mamba create -n r2t -c conda-forge -c bioconda python=3.10.8 read2tree. Please let us know the result.

— Reply to this email directly, view it on GitHubhttps://github.com/DessimozLab/read2tree/issues/48#issuecomment-1770211500, or unsubscribehttps://github.com/notifications/unsubscribe-auth/BDK2J4I4BZKMV32TT6QC26DYADIIHAVCNFSM6AAAAAA6DWV7R2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTONZQGIYTCNJQGA. You are receiving this because you authored the thread.Message ID: @.***>