Open Yuqia opened 10 months ago
I guess you could just back up your concatenated MSA (.phy) and the tree files in a different folder. Then just run:
read2tree --standalone_path marker_genes/ --output_path output --reads species3_R1.fastq species3_R2.fastq
An n' number of times depending on how many samples you want to add, then finally:
read2tree --standalone_path marker_genes/ --output_path output --merge_all_mappings --tree
You will basically create a new concatenated alignment with the newly incorporated samples with the new tree inference at the end. Hope it helps.
Hello,
I'd like to add more species to the previously built tree. Is there a way to re-use the mapping information of the previously included species and add this information to the mapping information of the newly added species, instead of re-mapping all previously included species again?
Thank you.