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Destore2023 / MetaPathways-Bookkeeping

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[DataCap Application] <NCBI> - <Sequence Read Archive> #24

Open Philoooo9 opened 2 weeks ago

Philoooo9 commented 2 weeks ago

Version

1

DataCap Applicant

Philoooo9

Project ID

x

Data Owner Name

National Library of Medicine

Data Owner Country/Region

United States

Data Owner Industry

Life Science / Healthcare

Website

https://www.nlm.nih.gov/

Social Media Handle

@NLM_NIH

Social Media Type

Twitter

What is your role related to the dataset

Data Preparer

Total amount of DataCap being requested

12PiB

Expected size of single dataset (one copy)

1592.4TiB

Number of replicas to store

8

Weekly allocation of DataCap requested

512TiB

On-chain address for first allocation

f1mp4xe27l46wl5vq4qdmedj5k5qm7twsewbgkgvy

Data Type of Application

Public, Open Dataset (Research/Non-Profit)

Custom multisig

Identifier

No response

Share a brief history of your project and organization

The Sequence Read Archive (SRA), produced by the National Center for Biotechnology Information (NCBI) at the National Library of Medicine (NLM) at the National Institutes of Health (NIH), stores raw DNA sequencing data and alignment information from high-throughput sequencing platforms. The SRA provides open access to these biological sequence data to support the research community's efforts to enhance reproducibility and make new discoveries by comparing data sets.

Is this project associated with other projects/ecosystem stakeholders?

No

If answered yes, what are the other projects/ecosystem stakeholders

No response

Describe the data being stored onto Filecoin

Public SRA data in the original (user submitted) format from select high value and newly-released studies as well as all public-access SRA formatted ETL+BQS data. Also included is all SRA metadata that can be leveraged for attribute-based data discovery.

Where was the data currently stored in this dataset sourced from

AWS Cloud

If you answered "Other" in the previous question, enter the details here

No response

If you are a data preparer. What is your location (Country/Region)

Malaysia

If you are a data preparer, how will the data be prepared? Please include tooling used and technical details?

lotus is our mainly way to prepare data.

If you are not preparing the data, who will prepare the data? (Provide name and business)

No response

Has this dataset been stored on the Filecoin network before? If so, please explain and make the case why you would like to store this dataset again to the network. Provide details on preparation and/or SP distribution.

No response

Please share a sample of the data

aws s3 ls --no-sign-request s3://sra-pub-src-1/
aws s3 ls --no-sign-request s3://sra-pub-src-2/
aws s3 ls --no-sign-request s3://sra-pub-run-odp/
aws s3 ls --no-sign-request s3://sra-pub-metadata-us-east-1/sra/metadata/

Confirm that this is a public dataset that can be retrieved by anyone on the Network

If you chose not to confirm, what was the reason

No response

What is the expected retrieval frequency for this data

Daily

For how long do you plan to keep this dataset stored on Filecoin

More than 3 years

In which geographies do you plan on making storage deals

Greater China, Asia other than Greater China, North America, Europe

How will you be distributing your data to storage providers

HTTP or FTP server, Shipping hard drives, Lotus built-in data transfer

How did you find your storage providers

Slack, Partners

If you answered "Others" in the previous question, what is the tool or platform you used

No response

Please list the provider IDs and location of the storage providers you will be working with.

f03216485/Sichuan
f03214920/HongKong
f03228358/Zhejiang
f01975299/Guangdong
f01084941/Hong Kong

How do you plan to make deals to your storage providers

Lotus client

If you answered "Others/custom tool" in the previous question, enter the details here

No response

Can you confirm that you will follow the Fil+ guideline

Yes

datacap-bot[bot] commented 2 weeks ago

Application is waiting for allocator review

Destore2023 commented 2 weeks ago

Please fill in this form to complete your information. https://www.wenjuan.com/s/qAVFfuN/

Philoooo9 commented 2 weeks ago

image Can you see my form?

Destore2023 commented 2 weeks ago

@Philoooo9 Good. Got it. image

Destore2023 commented 2 weeks ago

There used to have someone who tried to store this dataset. Why do you want to store the dataset?

When you want to use datacap to store data, you'd better to select sps in different regions. Also, please make your sps support retrieval! We will check it from time to time.

Philoooo9 commented 2 weeks ago

@Destore2023 We have stored this dataset for 2 years. Due to the large size of this dataset, our local storage space is becoming insufficient to keep this dataset all the time. We want to store this dataset into filecoin network. We just want to keep the part we have downloaded. It is from NLM and useful to research. Could we store this data here?

Destore2023 commented 2 weeks ago

@Philoooo9 Filecoin welcomes all kinds of valuable data being stored. But please take the storage process seriously and use datacap in a careful way. We will check cid report from time to time.

Philoooo9 commented 2 weeks ago

Thanks allocator. We will actively communicate with sps and you! @Destore2023 Please let us try our best.

datacap-bot[bot] commented 2 weeks ago

Datacap Request Trigger

Total DataCap requested

12PiB

Expected weekly DataCap usage rate

512TiB

DataCap Amount - First Tranche

512TiB

Client address

f1mp4xe27l46wl5vq4qdmedj5k5qm7twsewbgkgvy

datacap-bot[bot] commented 2 weeks ago

DataCap Allocation requested

Multisig Notary address

Client address

f1mp4xe27l46wl5vq4qdmedj5k5qm7twsewbgkgvy

DataCap allocation requested

512TiB

Id

3b32aff0-6c50-4869-b2e5-81d67989e4f3

datacap-bot[bot] commented 2 weeks ago

Application is ready to sign

datacap-bot[bot] commented 2 weeks ago

Request Approved

Your Datacap Allocation Request has been approved by the Notary

Message sent to Filecoin Network

bafy2bzaceawlopcoylseoae6gjuildcd7i65wpt7gmozu2vix34nigj7nlbrg

Address

f1mp4xe27l46wl5vq4qdmedj5k5qm7twsewbgkgvy

Datacap Allocated

512TiB

Signer Address

f1rppfznglfb7uyn3k6sfzeh47yq54ptvia5ixwsq

Id

3b32aff0-6c50-4869-b2e5-81d67989e4f3

You can check the status of the message here: https://filfox.info/en/message/bafy2bzaceawlopcoylseoae6gjuildcd7i65wpt7gmozu2vix34nigj7nlbrg

datacap-bot[bot] commented 2 weeks ago

Application is Granted

Philoooo9 commented 2 weeks ago

Dear allocator @Destore2023, we'd add three sps into our plan. f01084413 Hunan f03100009 Guangdong f03233966 Zhejiang

datacap-bot[bot] commented 2 weeks ago

Client used 75% of the allocated DataCap. Consider allocating next tranche.

Destore2023 commented 2 weeks ago

checker:manualTrigger

datacap-bot[bot] commented 2 weeks ago

DataCap and CID Checker Report Summary[^1]

Storage Provider Distribution

✔️ Storage provider distribution looks healthy.

⚠️ 25.00% of Storage Providers have retrieval success rate equal to zero.

⚠️ 75.00% of Storage Providers have retrieval success rate less than 75%.

Deal Data Replication

✔️ Data replication looks healthy.

Deal Data Shared with other Clients[^3]

✔️ No CID sharing has been observed.

[^1]: To manually trigger this report, add a comment with text checker:manualTrigger

[^2]: Deals from those addresses are combined into this report as they are specified with checker:manualTrigger

[^3]: To manually trigger this report with deals from other related addresses, add a comment with text checker:manualTrigger <other_address_1> <other_address_2> ...

Full report

Click here to view the CID Checker report.

Destore2023 commented 2 weeks ago

@Philoooo9 Seems there's one sp do not support retrieval yet. Please remind this sp or change sp who is supporting retrieval. Also, please add sps to store more replicas.

Philoooo9 commented 2 weeks ago

@Destore2023 Thank you allocator. Thanks for your tips. We contacted with that sp. They found out it was a network problem and are fixing it.

Destore2023 commented 1 week ago

checker:manualTrigger

datacap-bot[bot] commented 1 week ago

DataCap and CID Checker Report Summary[^1]

Storage Provider Distribution

✔️ Storage provider distribution looks healthy.

⚠️ 75.00% of Storage Providers have retrieval success rate less than 75%.

Deal Data Replication

✔️ Data replication looks healthy.

Deal Data Shared with other Clients[^3]

✔️ No CID sharing has been observed.

[^1]: To manually trigger this report, add a comment with text checker:manualTrigger

[^2]: Deals from those addresses are combined into this report as they are specified with checker:manualTrigger

[^3]: To manually trigger this report with deals from other related addresses, add a comment with text checker:manualTrigger <other_address_1> <other_address_2> ...

Full report

Click here to view the CID Checker report.

Philoooo9 commented 1 week ago

image @Destore2023 allocator, this sp is repairing the node and it supports retrieval in spark again. Please approve us next round.

Destore2023 commented 1 week ago

@Philoooo9 Happy to see the improvement.

datacap-bot[bot] commented 1 week ago

Application is in Refill

datacap-bot[bot] commented 1 week ago

Request Approved

Your Datacap Allocation Request has been approved by the Notary

Message sent to Filecoin Network

bafy2bzaced53s2bv734ojdqajgelaa5eqlifxpdvbfrnmdynmst7qdn35r2s4

Address

f1mp4xe27l46wl5vq4qdmedj5k5qm7twsewbgkgvy

Datacap Allocated

1PiB

Signer Address

f1rppfznglfb7uyn3k6sfzeh47yq54ptvia5ixwsq

Id

f76e4dda-6836-42dc-ba4f-d8b551d11e49

You can check the status here https://filfox.info/en/message/bafy2bzaced53s2bv734ojdqajgelaa5eqlifxpdvbfrnmdynmst7qdn35r2s4

datacap-bot[bot] commented 1 week ago

Application is Granted

filecoin-watchdog commented 1 day ago

checker:manualTrigger

datacap-bot[bot] commented 1 day ago

DataCap and CID Checker Report Summary[^1]

Storage Provider Distribution

✔️ Storage provider distribution looks healthy.

⚠️ 66.67% of Storage Providers have retrieval success rate less than 75%.

Deal Data Replication

✔️ Data replication looks healthy.

Deal Data Shared with other Clients[^3]

✔️ No CID sharing has been observed.

[^1]: To manually trigger this report, add a comment with text checker:manualTrigger

[^2]: Deals from those addresses are combined into this report as they are specified with checker:manualTrigger

[^3]: To manually trigger this report with deals from other related addresses, add a comment with text checker:manualTrigger <other_address_1> <other_address_2> ...

Full report

Click here to view the CID Checker report.