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DevelopmentalImagingMCRI / MCRIBS

Surface version of the M-CRIB atlases.
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GPU usage #2

Closed yuniorcf-80 closed 3 years ago

yuniorcf-80 commented 3 years ago

Hi, thanks for sharing such an amazing tool. I have managed to run the software by using the following syntax: "MCRIBReconAll -all --subjectage 44 ID0104 --openmp 8" However I am interested to use my GPU but I do not know how to write the command line. Syntaxes like "MCRIBReconAll -all --subjectage 44 ID0105 -use-gpu" or "MCRIBReconAll -all --subjectage 44 ID0105 --use-gpu" or "MCRIBReconAll -all -use-gpu --subjectage 44 ID0105" raises the following error: "MCRIBReconAll: error: unrecognized arguments: --use-gpu"

Could you please provide me a clue about it?

In addition I would like to provide a list os patients. I wonder whether that is possible? Thanks in advance

chrisadamsonmcri commented 3 years ago

Thank you.

The GPU portion has essentially been deprecated and removed since it was removed in Freesurfer 7. So just stick to the CPU version.

You can't provide a list of subjects to a single MCRIBReconAll since it only processes one subject at a time. You will need to loop through subjects yourself.

yuniorcf-80 commented 3 years ago

Dear @chrisadamsonmcri, thank you for your kind and quick response. Although it is bad news the pipeline performance is not that bad in my 8-cores CPU.

Thank you once again