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Devil625 / Codon_Optimization

https://www.nature.com/articles/s41598-020-74091-z#Tab1
Apache License 2.0
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CAI Calculation #4

Open SandhiyaRa opened 2 years ago

SandhiyaRa commented 2 years ago

Hello Admin! This work is more interesting.. I would like to know how the CAI is calculated for the sequences. Could you please share the code for the CAI computation?

Thanks!

deweihu96 commented 2 years ago

Hi @SandhiyaRa , I just found their CAI calculation is incorrect. In their paper, they mentioned that

image

But the wiki gives the equation as follow

image

from https://en.wikipedia.org/wiki/Codon_Adaptation_Index