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Dfam-consortium / RepeatMasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
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How to analyze RepeatProteinMask results #210

Closed LI-zijian1 closed 1 year ago

LI-zijian1 commented 1 year ago

hi，I have a question I run RepeatProteinMask and get the following two files .masked and .annot. Is there any way to get statistics like .tbl in the RepeatMasker result file?Can you help me, I will be very grateful.

LI-zijian1 commented 1 year ago

I found a script to analyze my results, here is the link to it https://github.com/JinfengChen/Scripts/blob/master/bin/stat_TE.pl

rmhubley commented 1 year ago

Thanks for posting this. We do not currently have summary stats built into RepeatProteinMask although we will add this to the enhancement list for a future release.