Reading and writing from pipes was handy, and nothing was really preventing that. Some minor modifications to read from stdin rather than a file and changed output_bed to fix a pandas to_csv error.
I've tested this on my own files for piped input/output or files, but there may be unexpected edge cases.
Reading and writing from pipes was handy, and nothing was really preventing that. Some minor modifications to read from stdin rather than a file and changed
output_bedto fix a pandasto_csverror.I've tested this on my own files for piped input/output or files, but there may be unexpected edge cases.