RepeatModeler ended with error

Dfam-consortium / RepeatModeler

De-Novo Repeat Discovery Tool

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RepeatModeler ended with error #114

Open yuanyuan12543 opened 3 years ago

yuanyuan12543 commented 3 years ago

Hi, my program ran ended with error as follow ERROR from search engine (2) 99% completed, 00:0:00 (hh:mm:ss) est. time remaining.

ERROR from search engine (2) 99% completed, 00:0:00 (hh:mm:ss) est. time remaining. 99% completed, 00:0:00 (hh:mm:ss) est. time remaining.

ERROR from search engine (2) 99% completed, 00:0:00 (hh:mm:ss) est. time remaining.

ERROR from search engine (2)

ERROR from search engine (2) 99% completed, 00:0:00 (hh:mm:ss) est. time remaining. 99% completed, 00:0:00 (hh:mm:ss) est. time remaining. 100% completed, 00:0:00 (hh:mm:ss) est. time remaining. Comparison Time: 171:01:51 (hh:mm:ss) Elapsed Time, 913758 HSPs Collected

RECON: Running imagespread..
imagespread failed. Exit code 512 Here is the script file repeatmodeler.txt

Here is run log file repeatmodeler.log.log

Thanks!

Junli

jebrosen commented 3 years ago

From the log it looks like it was running fine for a while, but then every sequence search started failed. Is it possible the disk was full, or that there was a temporary problem with the network?

Here are two suggestions to try next:

using -recoverDir in case it was a temporary issue
Running on a local disk instead of a network filesystem - this should be both faster and more reliable

yuanyuan12543 commented 3 years ago

Hi, Jeb,

You are right, it turned out that the reason is that our storage is full. After deleting files, it continued to run.

Thanks for your reply!

Best,

Junli

On Thu, Jan 21, 2021 at 2:29 PM Jeb Rosen notifications@github.com wrote:

From the log it looks like it was running fine for a while, but then every sequence search started failed. Is it possible the disk was full, or that there was a temporary problem with the network?

Here are two suggestions to try next:

using -recoverDir in case it was a temporary issue

Running on a local disk instead of a network filesystem - this should be both faster and more reliable

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BRNiu commented 2 years ago

Hi, yuanyuan12534! I just meet the same error with you<ERROR from search engine (2)>. But I have double checked the storage of my server and ensured its space is free. After comparing the "repeatmodeler.log" of us, I found repeatnodeler.log that the error of you arise in round-6 while that of me appears in round-2, so the problem of us maybe different.