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Dfam-consortium / RepeatModeler

De-Novo Repeat Discovery Tool
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There was .nhr .nin .nnd .nni .nog .nsq .translation in my RepeatModeler outputs, but had no consensi.fa.classified, how to make it? #133

Open gzhgzh opened 3 years ago

gzhgzh commented 3 years ago

I run the command: BuildDatabase -name maize Zea_mays.B73_RefGen_v4.dna.chromosome.1.fa The outputs contained: maize.nhr maize.nin maize.nnd maize.nni maize.nog maize.nsq maize.translation But didn't have file consensi.fa.classified. Even I didn't get consensi.fa and families.stk.

jebrosen commented 3 years ago

I run the command: BuildDatabase -name maize Zea_mays.B73_RefGen_v4.dna.chromosome.1.fa The outputs contained: maize.nhr maize.nin maize.nnd maize.nni maize.nog maize.nsq maize.translation

That looks like the right output files for BuildDatabase (different versions of RMBlast might create slightly different sets of files).

But didn't have file consensi.fa.classified. Even I didn't get consensi.fa and families.stk.

What command did you use to run RepeatModeler? Was there any problem reported in the output?