I am trying to run RepeatClassifier on several consensi.fa.
I have noticed that when I run RepeatClassifier on several files at the same time, the first one works correctly, whereas all the others have very few classified TE. For example, if I run:
nohup RepeatClassifier -consensi genome1/consensi.fa -stockholm genome1/families.fa &nohup RepeatClassifier -consensi genome2/consensi.fa -stockholm genome2/families.fa &
Everything seems to work perfectly looking at the nohup.out, however there are very few classified TE for genome2 (genome1 is normal though).
Indeed, it has only 66 classfied LTR, 19 classified DNA, and 37 classified LINE. If I run again this genome2 alone, I get 185 classified LTR, 24 classfied DNA and 253 classified LINE. I tried that on several genomes, trying to run them alone on my server or at the same time as others, and I always obtain the same pattern. Do you have any idea how come and how I could run several RepeatClassifier correctly at the same time?
Hi,
I am trying to run RepeatClassifier on several consensi.fa. I have noticed that when I run RepeatClassifier on several files at the same time, the first one works correctly, whereas all the others have very few classified TE. For example, if I run:
nohup RepeatClassifier -consensi genome1/consensi.fa -stockholm genome1/families.fa &nohup RepeatClassifier -consensi genome2/consensi.fa -stockholm genome2/families.fa &Everything seems to work perfectly looking at the nohup.out, however there are very few classified TE for genome2 (genome1 is normal though). Indeed, it has only 66 classfied LTR, 19 classified DNA, and 37 classified LINE. If I run again this genome2 alone, I get 185 classified LTR, 24 classfied DNA and 253 classified LINE. I tried that on several genomes, trying to run them alone on my server or at the same time as others, and I always obtain the same pattern. Do you have any idea how come and how I could run several RepeatClassifier correctly at the same time?Thank you,
Héloïse Muller