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Dfam-consortium / RepeatModeler

De-Novo Repeat Discovery Tool
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can't find species-families.fa file #171

Closed ABDULLAHGUJJAR closed 2 years ago

ABDULLAHGUJJAR commented 2 years ago

1) BuildDatabase -name taxa-a ptg0000041-taxa-A.fasta 2) RepeatModeler -database taxa-a -pa 4 -LTRStruct 1>step2.log 2>&1 & 3) RepeatMasker -lib taxa-a-families.fa ptg0000041-taxa-A.fasta

Error

RepeatMasker version open-4.0.9 Search Engine: NCBI/RMBLAST [ 2.9.0+ ] RepeatMasker::setspecies: Could not find user specified library taxa-a-families.fa.

I have checked in RM_directory> round_1 with the following files

consensi.fa consensi.fa.nsi ncResults-1654103659-2323.out sampleDB-1.fa.nhr sampleDB-1.fa.nsq consensi.fa.nhr consensi.fa.nsq repeatscout.log sampleDB-1.fa.nin sampleDB-1.fa.rscons consensi.fa.nin filter-stage-1.log sampleDB-1.fa sampleDB-1.fa.nnd sampleDB-1.fa.rscons.filtered consensi.fa.nog makeblastdb.log sampleDB-1.fa.entry_batch sampleDB-1.fa.nni consensi.fa.nsd ncResults-1654103659-2323.err sampleDB-1.fa.lfreq sampleDB-1.fa.nog

even i can't find "families.stk" in the RM_directory Please can you guide me about this error ??