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Dfam-consortium / RepeatModeler

De-Novo Repeat Discovery Tool
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sumarry result tabel #172

Closed ABDULLAHGUJJAR closed 11 months ago

ABDULLAHGUJJAR commented 2 years ago

I have run repeatmodeler succesfully but i didn't get this type of summary table. this repeatmodeler table i got from gensas webtool repeatmodeler can you guide me where i can find this table if i use repeatmodeler. by cmd.? i have checked round-1 to round-4

file name: t_627da85946ceb.fna
sequences: 1 total length: 29372977 bp (29372977 bp excl N/X-runs) GC level: 44.07 % bases masked: 11277996 bp ( 38.40 %)

           number of      length   percentage
           elements*    occupied  of sequence

Retroelements 3957 5684421 bp 19.35 % SINEs: 0 0 bp 0.00 % Penelope 0 0 bp 0.00 % LINEs: 326 105797 bp 0.36 % CRE/SLACS 0 0 bp 0.00 % L2/CR1/Rex 0 0 bp 0.00 % R1/LOA/Jockey 0 0 bp 0.00 % R2/R4/NeSL 0 0 bp 0.00 % RTE/Bov-B 0 0 bp 0.00 % L1/CIN4 326 105797 bp 0.36 % LTR elements: 3631 5578624 bp 18.99 % BEL/Pao 0 0 bp 0.00 % Ty1/Copia 225 245581 bp 0.84 % Gypsy/DIRS1 3167 5256837 bp 17.90 %

rmhubley commented 11 months ago

RepeatModeler is a library generating tool and not an annotation tool. You could use your generated library with RepeatMasker to obtain these types of statistics.