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Dfam-consortium / RepeatModeler

De-Novo Repeat Discovery Tool
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Can't call method "setLeftLinkedHit" #179

Closed Ghanizadeh1980 closed 1 year ago

Ghanizadeh1980 commented 1 year ago

Hi,

Can somebody help me with the error message below, please? I was running RepeatMasker, and everything was running smoothly for about 2 hours, then suddenly, this message popped up. Here is the command."sudo docker run -it --rm -vpwd:pwd dfam/tetools:latest RepeatMasker /home/dieter/GB/medaka/consensus.fasta -lib /home/dieter/GB/repeatmodeller/GB-families.fa -pa 8 -gff -dir /home/dieter/GB/repeatmasker/"

"Can't call method "setLeftLinkedHit" on an undefined value at /opt/RepeatMasker/ProcessRepeats line 3726."

Regards,

Hossein.

rmhubley commented 1 year ago

Please try the latest version of RepeatMasker 4.1.3p1 which should fix this issue.