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Dfam-consortium / RepeatModeler

De-Novo Repeat Discovery Tool
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RepeatModeler2 LtrPipeline not return any results #194

Closed mkbcit closed 1 year ago

mkbcit commented 1 year ago

I have been running RepeatModeler2 in the Conda environment which runs smoothly until round 6. The RepeatModeler job completes, but the LTR Structural Analysis not return any results. Error return like:

LtrPipeline: GenomeTools failed to build suffixtree datastructure. This is frequently caused by a lack of disk space. Error code: 1

mkbcit commented 1 year ago

-LTRStruct in the RM2 pipeline encounter error. I found the error in log file like that

tool 'suffixerator' not found; option -help lists possible tools