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Dfam-consortium / RepeatModeler

De-Novo Repeat Discovery Tool
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What is the default search engine used by BuildDatabase? #224

Closed Ruiqi-CUB closed 2 months ago

Ruiqi-CUB commented 10 months ago

From the documentaion: -engine <engine name> The name of the search engine we are using. I.e abblast/wublast or ncbi (rmblast version).

If I do not specify the search engine, what is the default search engine used by BuildDatabase?

For example, BuildDatabase -name AnnotationDB Genome.fasta

Thanks a lot

rmhubley commented 2 months ago

Currently on rmblast is supported. The -engine parameter has been deprecated.