search

Dfam-consortium / RepeatModeler

De-Novo Repeat Discovery Tool
Other
182 stars 23 forks source link

consensi.fa is empty #235

Open 44314474 opened 4 months ago

44314474 commented 4 months ago

Hello! When i used RepeatModeler, the file of consensi.fa is empty, i don't know where is wrong. The code i used :/home/wei/miniconda3/bin/RepeatModeler -database Callinectes_sapidus -engine ncbi -pa 40 The details: 1 image image image Can you give me some suggestions? Thanks for your help!

Innocent-L commented 1 month ago

Hi, I'm having the same issue, can you solve it? If so, can you tell me the reason for the error？Thanks

rmhubley commented 2 weeks ago

Sorry...for the delay. There is something very strange with your input genome for this run. It is atypical that you would have only 5, and consistently 5 instances of a family found by RepeatScout/RECON unless you are handing it a non-standard input sequence. RepeatModeler has a minimum of 15 instances per family. All these "discoveries" are being filtered out because of that.