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Dfam-consortium / RepeatModeler

De-Novo Repeat Discovery Tool
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ROUND5 ERROR from search engine (0) #242

Open pure6688 opened 2 months ago

pure6688 commented 2 months ago

When using RepeatModeler2.0.5 to analyze the genome, we encountered a RECON error in ROUND5: ERROR from search engine (0) The RECON version is 1.08 But it doesn 't give specific information about the error, so I can 't solve it. Here is the error code:

Number of families returned by RECON: 59085 Processing families with greater than 15 elements Instance Gathering: 00:00:08 (hh:mm:ss) Elapsed Time Refining 344 families

ERROR from search engine (0)

ERROR from search engine (0) Family Refinement: 00:29:33 (hh:mm:ss) Elapsed Time Round Time: 16:15:54 (hh:mm:ss) Elapsed Time : 286 families discovered.

RepeatScout/RECON discovery complete: 576 families found

rmhubley commented 2 weeks ago

Sorry for the delay....we are a bit short staffed. In case this is useful in the future. This error comes from RMBlast and could be due to limited memory, a problem with the program binary (e.g. not compatible with the system), or rarely an unknown bug. In these cases RMBlast probably wrote a file of the form "ncResults-1717693025-928291-4581.18367278532.err" to the filesystem in the temporary working directory ( of the form "RM_927755.ThuJun60957032024/" ) or one of its subdirectories. In a case like this it's helpful to look for any non-empty files ending in "*.err" in this directory and look inside for more details about what happened.