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Dfam-consortium / RepeatModeler

De-Novo Repeat Discovery Tool
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Error running BuildDatabase #76

Open avdanurag opened 4 years ago

avdanurag commented 4 years ago

Dear sir/maam, I am getting error (Error: Unknown argument: "blastdb_version") while building database with RepeatModeler

./BuildDatabase -name Sonasal_3x.fasta -engine ncbi /home/anurag/Downloads/maker/Rice/Sonasal_3x.fasta Building database Sonasal_3x.fasta: Reading /home/anurag/Downloads/maker/Rice/Sonasal_3x.fasta... The makeblastdb program did not generate the file Sonasal_3x.fasta.nsq. Please check your input file(s) for potential formating errors. /home/anurag/Downloads/rmblast-2.2.28/bin//makeblastdb returned: USAGE makeblastdb [-h] [-help] [-in input_file] [-input_type type] -dbtype molecule_type [-title database_title] [-parse_seqids] [-hash_index] [-mask_data mask_data_files] [-gi_mask] [-gi_mask_name gi_based_mask_names] [-out database_name] [-max_file_sz number_of_bytes] [-taxid TaxID] [-taxid_map TaxIDMapFile] [-logfile File_Name] [-version]

DESCRIPTION Application to create BLAST databases, version 2.2.28+

Use '-help' to print detailed descriptions of command line arguments

Error: Unknown argument: "blastdb_version"

The command used was: /home/anurag/Downloads/rmblast-2.2.28/bin//makeblastdb -blastdb_version 2.2.28 -out Sonasal_3x.fasta -parse_seqids -dbtype nucl -in ./2Ttcv6AoDa 2>&1 Died at ./BuildDatabase line 333.

jebrosen commented 4 years ago

RepeatModeler 2.0.1 dropped support for rmblast older than 2.9.0-p2, in order to add support for RMBlast 2.10.0. Both of the currently supported versions of RMBlast available at http://repeatmasker.org/RMBlast.html work with both RepeatModeler and RepeatMasker.