[WIP] local changes in ferrari setup

[wvlothuizen]

just a test to see what we would get

[wvlothuizen]

@MiguelSMoreira doesn't look too difficult to backport

[MiguelSMoreira]

@wvlothuizen it was silly of me to attempt merging of develop onto local, with all the recent changes done on develop, should have been the other way around.

That's a good point, most of the changes made were for automated calibrations (some changes of thresholds, conditions, etc for common experiments) and preventing the use of matplotlib interactively. Most other changes are relatively minor. However, I am intrigued how GitHub is able to track the changes, for example, to CCL Transmon, here since that class was 'renamed' to HAL_Transmon. Is git smart enough to track changes across files that were renamed, or is this PR done against a not-up-to-date version of develop (doesn't appear to be the case)?

[wvlothuizen]

Regarding the changes presented, note that Github normally shows a three-dot diff that can be confusing if you're not aware: https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/about-comparing-branches-in-pull-requests#three-dot-and-two-dot-git-diff-comparisons

[codecov[bot]]

Codecov Report

Merging #684 (0303a43) into develop (54b57f9) will decrease coverage by 0.01%. The diff coverage is 11.42%.

@@             Coverage Diff             @@
##           develop     #684      +/-   ##
===========================================
- Coverage    35.77%   35.76%   -0.02%     
===========================================
  Files          297      297              
  Lines        64740    64787      +47     
===========================================
+ Hits         23162    23168       +6     
- Misses       41578    41619      +41     

Impacted Files	Coverage Δ
...d/instrument_drivers/meta_instrument/HAL_Device.py	4.61% <0.00%> (-0.07%)	:arrow_down:
...rivers/meta_instrument/inspire_dependency_graph.py	0.00% <0.00%> (ø)
...vers/meta_instrument/qubit_objects/qubit_object.py	19.04% <ø> (ø)
pycqed/analysis/measurement_analysis.py	49.31% <33.33%> (-0.01%)	:arrow_down:
...vers/meta_instrument/qubit_objects/HAL_Transmon.py	18.09% <33.33%> (+0.05%)	:arrow_up:
pycqed/analysis_v2/base_analysis.py	75.43% <100.00%> (+0.05%)	:arrow_up:
pycqed/analysis/analysis_toolbox.py	42.96% <0.00%> (+0.06%)	:arrow_up:

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