Hi there - Thanks again for your directions previously re: running asr_calibrate() on numpy arrays. I tried testing this on a slice of EEG data and am receiving the following error:
Geometric median could converge in 500 iterations with a tolerance of 1e-05
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
/var/folders/bg/b08l9ly13yb_4hsjwlrvx0dm0000gn/T/ipykernel_5374/3832493090.py in <module>
5 # calibrate
6 calibration_data = bandpassed_eeg_data[:, start_calibration: end_calibration]
----> 7 M, T = asr_calibrate(X = calibration_data, sfreq = baseline_eeg_srate, cutoff = asr_cutoff, method = 'euclidean')
8
9 # clean
~/Documents/EEGHRV/asr.py in asr_calibrate(X, sfreq, cutoff, blocksize, win_len, win_overlap, max_dropout_fraction, min_clean_fraction, ab, method)
431 # Uavg = pyriemann.utils.mean_covariance(U, metric='riemann')
432 Uavg = geometric_median(U.reshape((-1, nc * nc)) / blocksize)
--> 433 Uavg = Uavg.reshape((nc, nc))
434
435 # get the mixing matrix M
AttributeError: 'NoneType' object has no attribute 'reshape'
My guess is that the script output: "Geometric median could converge" actually means the geometric median could "not" converge.
When I run the helper functions in asr_utils.py individually for the calibration data:
U = block_covariance(calibration_data)
print(U.shape)
U = U.reshape((-1, 19 * 19))
print(U.shape)
temp = geometric_median(U)
It seems that the geometric_median() function is returning 'None' because of failure to converge.
Any thoughts on how to fix this? I see in the asr_calibrate() documentation that it expects a "zero-mean array". Does this mean that each channel should be zero-mean'd? Thanks!
Hi there - Thanks again for your directions previously re: running asr_calibrate() on numpy arrays. I tried testing this on a slice of EEG data and am receiving the following error:
My guess is that the script output: "Geometric median could converge" actually means the geometric median could "not" converge.
When I run the helper functions in asr_utils.py individually for the calibration data:
It seems that the geometric_median() function is returning 'None' because of failure to converge.
Any thoughts on how to fix this? I see in the asr_calibrate() documentation that it expects a "zero-mean array". Does this mean that each channel should be zero-mean'd? Thanks!