DiSSCo / SDR

Specimen Data Refinery
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Define a JSON schema for image objects #17

Closed hardistyar closed 1 year ago

hardistyar commented 3 years ago

A CORDRA compatible JSON schema for image objects is needed.

hardistyar commented 3 years ago

The image will be a jpeg file so all we need to do is decide what additional information needs to be stored alongside the image. A PID is assigned automatically when the image object is created. I don't think it's very much info, just a few bits and pieces about where the image came from/who owns it, etc.

llivermore commented 3 years ago

The basic information would be:

There was some discussion at the CETAF ISTC/DWG about a controlled vocabularly to describe what an image contains which would helpful for the SDR.

There are some optional fields that we will want to support in the future. A described by Functional Requirement 2.3, "Additional data can be submitted with the initial object, with fields pre-filled with data that could otherwise be populated by workflow tasks."

PaulBrack commented 2 years ago

Removed POC milestone as this will require further work past the milestone

llivermore commented 1 year ago

We are using a single object-based approach in the SDR which combines the image and the specimen data. This was in part due to the openDigital Specimen schema being under active development, and challenges using FDOs in Galaxy (at least in our approach).