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DiSSCo / SDR

Specimen Data Refinery
Apache License 2.0
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Implement the open Digital Specimen specification upon stable release #18

Closed hardistyar closed 1 year ago

hardistyar commented 3 years ago

A definition and corresponding CORDRA compatible JSON schema is needed for a Digital Specimen structure meeting the needs of the SDR MVP. Must be able to hold multiple images and and defined data capture/enrichment fields. This list of fields needs to be defined by @llivermore .

llivermore commented 3 years ago

List of fields for the SDR MVP is being collated in a Google Sheet

PaulBrack commented 2 years ago

Removed POC milestone as this will require further work past the milestone

PaulBrack commented 2 years ago

Reopened as closed in error

llivermore commented 2 years ago

Review fields and outputs we are currently creating and map to latest version of openDS

llivermore commented 1 year ago

Current data model: draft DiSSCo datamodel-openDS drawio

llivermore commented 1 year ago

We are using a single object-based approach in the SDR which combines the image and the specimen data. This was in part due to the openDigital Specimen schema being under active development, and challenges using FDOs in Galaxy (at least in our approach). We have not updated the fields to the latest specification - first stable release is due after SYNTHESYS+ funding is over.