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DiSSCo / SDR

Specimen Data Refinery
Apache License 2.0
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Create an end-to-end Galaxy workflow with no dummy parts #22

Closed PaulBrack closed 2 years ago

PaulBrack commented 3 years ago
  1. Retrieve image from an API
  2. Create a populated SDO
  3. Pre-processes an image
  4. Reads a bar code
  5. Does some OCR
  6. Updates SDO with information from image
PaulBrack commented 2 years ago
  1. See #34
  2. See #23
  3. Going to just go with resizing for now - native Galaxy tool
  4. @benscott I've created #38 and assigned us both
  5. @benscott created #39 and assigned us both
  6. Should be in-built functionality of #38 and #39
llivermore commented 2 years ago

Following discussion this should include:

  1. See #34
  2. See #23
  3. Use Teklia's segmentation tool on image and update open digital specimen object with ROIs
PaulBrack commented 2 years ago

Demoed 27/10/21