llivermore
commented
2 years ago Works as expected. Tested on a few specimens including NHMUK012824346. Example output (reference image below):
{
"authoritative": {
"physicalSpecimenId": "test",
"institution": [
"test",
"test"
],
"materialType": "Pinned insect"
},
"images": {
"availableImages": [
{
"source": "https://data.nhm.ac.uk/media/659121/preview",
"license": "CC BY"
}
]
},
"higher_classification": "test",
"payloads": {
"name": "original image",
"filename": "55655020-e676-471d-b848-97794134f9c6.jpeg",
"width": 1440,
"height": 960,
"mediaType": "image/jpeg",
"size n": 196911
},
"regions": [
{
"polygon": [
[
1040,
67
],
[
1350,
61
],
[
1353,
223
],
[
1044,
228
]
],
"confidence": 0.94,
"class_name": "label"
},
{
"polygon": [
[
63,
97
],
[
843,
82
],
[
853,
611
],
[
73,
626
]
],
"confidence": 0.84,
"class_name": "specimen"
},
{
"polygon": [
[
1053,
249
],
[
1350,
249
],
[
1350,
390
],
[
1053,
390
]
],
"confidence": 0.92,
"class_name": "label"
},
{
"polygon": [
[
1374,
406
],
[
1408,
406
],
[
1408,
421
],
[
1374,
421
]
],
"confidence": 0.45,
"class_name": "label"
},
{
"polygon": [
[
1320,
408
],
[
1363,
408
],
[
1363,
420
],
[
1320,
420
]
],
"confidence": 0.48,
"class_name": "color_bar"
},
{
"polygon": [
[
1230,
414
],
[
1318,
408
],
[
1320,
420
],
[
1231,
425
]
],
"confidence": 0.55,
"class_name": "label"
},
{
"polygon": [
[
1055,
421
],
[
1138,
418
],
[
1140,
425
],
[
1057,
429
]
],
"confidence": 0.45,
"class_name": "color_bar"
},
{
"polygon": [
[
997,
425
],
[
1406,
405
],
[
1413,
573
],
[
1006,
592
]
],
"confidence": 0.73,
"class_name": "bar_code"
},
{
"polygon": [
[
873,
534
],
[
907,
525
],
[
911,
538
],
[
877,
547
]
],
"confidence": 0.46,
"class_name": "specimen"
},
{
"polygon": [
[
1005,
562
],
[
1413,
549
],
[
1415,
618
],
[
1008,
631
]
],
"confidence": 0.65,
"class_name": "label"
},
{
"polygon": [
[
1001,
601
],
[
1005,
583
],
[
1021,
586
],
[
1018,
605
]
],
"confidence": 0.43,
"class_name": "color_bar"
},
{
"polygon": [
[
963,
665
],
[
1083,
665
],
[
1083,
675
],
[
963,
675
]
],
"confidence": 0.46,
"class_name": "color_bar"
},
{
"polygon": [
[
1078,
667
],
[
1408,
667
],
[
1408,
761
],
[
1078,
761
]
],
"confidence": 0.51,
"class_name": "label"
},
{
"polygon": [
[
1365,
667
],
[
1368,
656
],
[
1410,
667
],
[
1408,
680
]
],
"confidence": 0.23,
"class_name": "color_bar"
},
{
"polygon": [
[
3,
669
],
[
991,
663
],
[
993,
913
],
[
5,
918
]
],
"confidence": 0.73,
"class_name": "scale_bar"
},
{
"polygon": [
[
946,
695
],
[
978,
690
],
[
1003,
841
],
[
971,
847
]
],
"confidence": 0.26,
"class_name": "label"
},
{
"polygon": [
[
988,
838
],
[
1016,
834
],
[
1021,
877
],
[
993,
879
]
],
"confidence": 0.43,
"class_name": "color_bar"
},
{
"polygon": [
[
950,
871
],
[
963,
665
],
[
1415,
693
],
[
1402,
900
]
],
"confidence": 0.49,
"class_name": "bar_code"
},
{
"polygon": [
[
1155,
900
],
[
1168,
856
],
[
1280,
886
],
[
1269,
930
]
],
"confidence": 0.49,
"class_name": "label"
},
{
"polygon": [
[
945,
901
],
[
969,
838
],
[
1076,
879
],
[
1050,
943
]
],
"confidence": 0.43,
"class_name": "label"
}
]
}
Segmentation tool provided by Teklia as a self-contained Dockerised image which does not make any external service calls.